PDB 4YFX
X-RAY DIFFRACTION3.80 Å0 chains52 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Cview chain
10 domainsChain Dview chain
8 domainsChain Eview chain
1 domainChain Gview chain
2 domainsChain Hview chain
2 domainsChain Iview chain
10 domainsChain Jview chain
7 domainsChain Kview chain
1 domainAll Domains (52)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e4yfxA1 | A:7-52,A:179-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e4yfxA2 | A:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e4yfxB1 | B:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | B | e4yfxB2 | B:234-317 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 5 | B | e4yfxB3 | B:6-52,B:179-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 6 | C | e4yfxC1 | C:152-225,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e4yfxC2 | C:578-712 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 8 | C | e4yfxC3 | C:791-827,C:1063-1239 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 9 | C | e4yfxC4 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 10 | C | e4yfxC5 | C:226-234,C:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 11 | C | e4yfxC6 | C:3-151,C:452-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 12 | C | e4yfxC7 | C:939-1044 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 13 | C | e4yfxC8 | C:1240-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 14 | C | e4yfxC9 | C:828-938,C:1045-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 15 | C | e4yfxC10 | C:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 16 | D | e4yfxD1 | D:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 17 | D | e4yfxD2 | D:1152-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e4yfxD3 | D:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 19 | D | e4yfxD4 | D:8-333 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 20 | D | e4yfxD5 | D:895-931,D:1135-1151,D:1216-1376 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 21 | D | e4yfxD6 | D:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 22 | D | e4yfxD7 | D:334-377,D:418-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 23 | D | e4yfxD8 | D:378-417 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 24 | E | e4yfxE1 | E:2-90 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e4yfxF1 | F:95-154,F:212-447 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 26 | F | e4yfxF2 | F:502-609 | Sigma70_r3,Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 27 | F | e4yfxF3 | F:448-501 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 28 | G | e4yfxG1 | G:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 29 | G | e4yfxG2 | G:7-52,G:179-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 30 | H | e4yfxH1 | H:6-52,H:179-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 31 | H | e4yfxH2 | H:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 32 | I | e4yfxI1 | I:226-234,I:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 33 | I | e4yfxI2 | I:791-827,I:1063-1239 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 34 | I | e4yfxI3 | I:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 35 | I | e4yfxI4 | I:939-1044 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 36 | I | e4yfxI5 | I:578-712 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 37 | I | e4yfxI6 | I:152-225,I:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 38 | I | e4yfxI7 | I:828-938,I:1045-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 39 | I | e4yfxI8 | I:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 40 | I | e4yfxI9 | I:3-151,I:452-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 41 | I | e4yfxI10 | I:1240-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 42 | J | e4yfxJ1 | J:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 43 | J | e4yfxJ2 | J:639-811 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 44 | J | e4yfxJ3 | J:1214-1375 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 45 | J | e4yfxJ4 | J:812-931 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 46 | J | e4yfxJ5 | J:1137-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 47 | J | e4yfxJ6 | J:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 48 | J | e4yfxJ7 | J:16-341 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 49 | K | e4yfxK1 | K:2-80 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 50 | L | e4yfxL1 | L:95-154,L:212-447 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 51 | L | e4yfxL2 | L:502-609 | Sigma70_r3,Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 52 | L | e4yfxL3 | L:448-501 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors