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PDB 4YFX

X-RAY DIFFRACTION3.80 Å0 chains52 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (52)

#ChainDomain IDRangeFamilyClassification
1Ae4yfxA1A:7-52,A:179-235RNA_pol_L305 → 305.1 → 305.1.1
2Ae4yfxA2A:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be4yfxB1B:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
4Be4yfxB2B:234-317RNA_pol_A_CTD102 → 102.1 → 102.1.1
5Be4yfxB3B:6-52,B:179-233RNA_pol_L305 → 305.1 → 305.1.1
6Ce4yfxC1C:152-225,C:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
7Ce4yfxC2C:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
8Ce4yfxC3C:791-827,C:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
9Ce4yfxC4C:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
10Ce4yfxC5C:226-234,C:289-342275.1.1.0275 → 275.1 → 275.1.1
11Ce4yfxC6C:3-151,C:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
12Ce4yfxC7C:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
13Ce4yfxC8C:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
14Ce4yfxC9C:828-938,C:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
15Ce4yfxC10C:235-288275.1.1.0275 → 275.1 → 275.1.1
16De4yfxD1D:811-894275.1.1.0275 → 275.1 → 275.1.1
17De4yfxD2D:1152-1215325.1.7.0325 → 325.1 → 325.1.7
18De4yfxD3D:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
19De4yfxD4D:8-333RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
20De4yfxD5D:895-931,D:1135-1151,D:1216-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
21De4yfxD6D:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
22De4yfxD7D:334-377,D:418-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
23De4yfxD8D:378-4174951.1.1.04951 → 4951.1 → 4951.1.1
24Ee4yfxE1E:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe4yfxF1F:95-154,F:212-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
26Fe4yfxF2F:502-609Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
27Fe4yfxF3F:448-501Sigma70_r3101 → 101.1 → 101.1.1
28Ge4yfxG1G:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
29Ge4yfxG2G:7-52,G:179-233RNA_pol_L305 → 305.1 → 305.1.1
30He4yfxH1H:6-52,H:179-233RNA_pol_L305 → 305.1 → 305.1.1
31He4yfxH2H:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
32Ie4yfxI1I:226-234,I:289-342275.1.1.0275 → 275.1 → 275.1.1
33Ie4yfxI2I:791-827,I:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
34Ie4yfxI3I:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
35Ie4yfxI4I:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
36Ie4yfxI5I:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
37Ie4yfxI6I:152-225,I:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
38Ie4yfxI7I:828-938,I:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
39Ie4yfxI8I:235-288275.1.1.0275 → 275.1 → 275.1.1
40Ie4yfxI9I:3-151,I:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
41Ie4yfxI10I:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
42Je4yfxJ1J:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
43Je4yfxJ2J:639-811RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
44Je4yfxJ3J:1214-1375RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
45Je4yfxJ4J:812-931RNA_pol_Rpb1_5275 → 275.1 → 275.1.1
46Je4yfxJ5J:1137-1215325.1.7.0325 → 325.1 → 325.1.7
47Je4yfxJ6J:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
48Je4yfxJ7J:16-3414246.1.1.04246 → 4246.1 → 4246.1.1
49Ke4yfxK1K:2-80RNA_pol_Rpb6152 → 152.1 → 152.1.2
50Le4yfxL1L:95-154,L:212-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
51Le4yfxL2L:502-609Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
52Le4yfxL3L:448-501Sigma70_r3101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors