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PDB 4YLN

X-RAY DIFFRACTION5.50 Å0 chains81 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (81)

#ChainDomain IDRangeFamilyClassification
1Ae4ylnA1A:6-52,A:179-235RNA_pol_L305 → 305.1 → 305.1.1
2Ae4ylnA2A:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be4ylnB1B:6-52,B:168-222RNA_pol_L305 → 305.1 → 305.1.1
4Be4ylnB2B:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce4ylnC1C:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
6Ce4ylnC2C:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
7Ce4ylnC3C:226-234,C:289-342275.1.1.0275 → 275.1 → 275.1.1
8Ce4ylnC4C:152-225,C:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
9Ce4ylnC5C:2-151,C:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
10Ce4ylnC6C:828-938,C:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
11Ce4ylnC7C:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
12Ce4ylnC8C:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
13Ce4ylnC9C:791-827,C:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
14Ce4ylnC10C:235-288275.1.1.0275 → 275.1 → 275.1.1
15De4ylnD1D:811-894275.1.1.0275 → 275.1 → 275.1.1
16De4ylnD2D:895-931,D:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
17De4ylnD3D:1132-1215325.1.7.0325 → 325.1 → 325.1.7
18De4ylnD4D:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
19De4ylnD5D:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
20De4ylnD6D:1023-1131325.1.7.0325 → 325.1 → 325.1.7
21De4ylnD7D:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
22De4ylnD8D:932-1022325.1.7.0325 → 325.1 → 325.1.7
23De4ylnD9D:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
24Ee4ylnE1E:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe4ylnF1F:79-171,F:210-446Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
26Fe4ylnF2F:516-613Sigma70_r4101 → 101.1 → 101.1.1
27Fe4ylnF3F:447-515Sigma70_r3101 → 101.1 → 101.1.1
28Ge4ylnG1G:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
29Ge4ylnG2G:6-52,G:179-235RNA_pol_L305 → 305.1 → 305.1.1
30He4ylnH1H:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
31He4ylnH3H:6-52,H:168-222RNA_pol_L305 → 305.1 → 305.1.1
32Ie4ylnI1I:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
33Ie4ylnI2I:226-234,I:289-342275.1.1.0275 → 275.1 → 275.1.1
34Ie4ylnI3I:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
35Ie4ylnI4I:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
36Ie4ylnI5I:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
37Ie4ylnI6I:152-225,I:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
38Ie4ylnI7I:2-151,I:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
39Ie4ylnI8I:828-938,I:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
40Ie4ylnI9I:235-288275.1.1.0275 → 275.1 → 275.1.1
41Ie4ylnI10I:791-827,I:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
42Je4ylnJ1J:932-1022325.1.7.0325 → 325.1 → 325.1.7
43Je4ylnJ2J:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
44Je4ylnJ3J:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
45Je4ylnJ4J:811-894275.1.1.0275 → 275.1 → 275.1.1
46Je4ylnJ5J:895-931,J:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
47Je4ylnJ6J:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
48Je4ylnJ7J:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
49Je4ylnJ8J:1132-1215325.1.7.0325 → 325.1 → 325.1.7
50Je4ylnJ9J:1023-1131325.1.7.0325 → 325.1 → 325.1.7
51Ke4ylnK1K:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Le4ylnL2L:79-171,L:210-446Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
53Le4ylnL1L:480-613Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
54Le4ylnL3L:448-479Sigma70_r3101 → 101.1 → 101.1.1
55Me4ylnM1M:6-52,M:179-235RNA_pol_L305 → 305.1 → 305.1.1
56Me4ylnM2M:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
57Ne4ylnN1N:6-52,N:168-222RNA_pol_L305 → 305.1 → 305.1.1
58Ne4ylnN2N:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
59Oe4ylnO1O:828-938,O:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
60Oe4ylnO2O:2-151,O:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
61Oe4ylnO3O:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
62Oe4ylnO4O:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
63Oe4ylnO5O:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
64Oe4ylnO6O:226-234,O:289-342275.1.1.0275 → 275.1 → 275.1.1
65Oe4ylnO7O:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
66Oe4ylnO8O:235-288275.1.1.0275 → 275.1 → 275.1.1
67Oe4ylnO9O:791-827,O:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
68Oe4ylnO10O:152-225,O:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
69Pe4ylnP1P:1023-1132325.1.7.0325 → 325.1 → 325.1.7
70Pe4ylnP2P:1133-1215325.1.7.0325 → 325.1 → 325.1.7
71Pe4ylnP3P:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
72Pe4ylnP4P:811-894275.1.1.0275 → 275.1 → 275.1.1
73Pe4ylnP5P:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
74Pe4ylnP6P:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
75Pe4ylnP7P:895-931,P:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
76Pe4ylnP8P:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
77Pe4ylnP9P:932-1022325.1.7.0325 → 325.1 → 325.1.7
78Qe4ylnQ1Q:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
79Re4ylnR1R:480-613Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
80Re4ylnR2R:79-171,R:210-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
81Re4ylnR3R:448-479Sigma70_r3101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors