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PDB 4YLP

X-RAY DIFFRACTION5.50 Å0 chains81 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (81)

#ChainDomain IDRangeFamilyClassification
1Ae4ylpA1A:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
2Ae4ylpA2A:6-52,A:179-235RNA_pol_L305 → 305.1 → 305.1.1
3Be4ylpB1B:6-52,B:168-222RNA_pol_L305 → 305.1 → 305.1.1
4Be4ylpB3B:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce4ylpC1C:152-225,C:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
6Ce4ylpC2C:2-151,C:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
7Ce4ylpC3C:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
8Ce4ylpC4C:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
9Ce4ylpC5C:235-288275.1.1.0275 → 275.1 → 275.1.1
10Ce4ylpC6C:226-234,C:289-342275.1.1.0275 → 275.1 → 275.1.1
11Ce4ylpC7C:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
12Ce4ylpC8C:828-938,C:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
13Ce4ylpC9C:791-827,C:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
14Ce4ylpC10C:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
15De4ylpD1D:811-894275.1.1.0275 → 275.1 → 275.1.1
16De4ylpD2D:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
17De4ylpD3D:932-1022325.1.7.0325 → 325.1 → 325.1.7
18De4ylpD4D:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
19De4ylpD5D:895-931,D:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
20De4ylpD6D:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
21De4ylpD7D:1023-1132325.1.7.0325 → 325.1 → 325.1.7
22De4ylpD8D:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
23De4ylpD9D:1133-1215325.1.7.0325 → 325.1 → 325.1.7
24Ee4ylpE1E:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe4ylpF1F:480-613Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
26Fe4ylpF2F:79-171,F:210-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
27Fe4ylpF3F:448-479Sigma70_r3101 → 101.1 → 101.1.1
28Ge4ylpG1G:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
29Ge4ylpG2G:6-52,G:179-235RNA_pol_L305 → 305.1 → 305.1.1
30He4ylpH1H:6-52,H:168-222RNA_pol_L305 → 305.1 → 305.1.1
31He4ylpH3H:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
32Ie4ylpI1I:791-827,I:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
33Ie4ylpI2I:226-234,I:289-342275.1.1.0275 → 275.1 → 275.1.1
34Ie4ylpI3I:152-225,I:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
35Ie4ylpI4I:235-288275.1.1.0275 → 275.1 → 275.1.1
36Ie4ylpI5I:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
37Ie4ylpI6I:828-938,I:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
38Ie4ylpI7I:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
39Ie4ylpI8I:2-151,I:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
40Ie4ylpI9I:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
41Ie4ylpI10I:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
42Je4ylpJ1J:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
43Je4ylpJ2J:932-1022325.1.7.0325 → 325.1 → 325.1.7
44Je4ylpJ3J:1023-1132325.1.7.0325 → 325.1 → 325.1.7
45Je4ylpJ4J:811-894275.1.1.0275 → 275.1 → 275.1.1
46Je4ylpJ5J:895-931,J:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
47Je4ylpJ6J:1133-1215325.1.7.0325 → 325.1 → 325.1.7
48Je4ylpJ7J:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
49Je4ylpJ8J:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
50Je4ylpJ9J:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
51Ke4ylpK1K:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Le4ylpL1L:485-613Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
53Le4ylpL2L:447-479Sigma70_r3101 → 101.1 → 101.1.1
54Le4ylpL3L:79-171,L:210-446Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
55Me4ylpM1M:6-52,M:179-235RNA_pol_L305 → 305.1 → 305.1.1
56Me4ylpM2M:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
57Ne4ylpN2N:6-52,N:168-222RNA_pol_L305 → 305.1 → 305.1.1
58Ne4ylpN3N:53-167RNA_pol_A_bac240 → 240.2 → 240.2.1
59Oe4ylpO1O:152-225,O:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
60Oe4ylpO2O:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
61Oe4ylpO3O:2-151,O:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
62Oe4ylpO4O:235-288275.1.1.0275 → 275.1 → 275.1.1
63Oe4ylpO5O:226-234,O:289-342275.1.1.0275 → 275.1 → 275.1.1
64Oe4ylpO6O:791-827,O:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
65Oe4ylpO7O:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
66Oe4ylpO8O:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
67Oe4ylpO9O:828-938,O:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
68Oe4ylpO10O:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
69Pe4ylpP1P:895-931,P:1214-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
70Pe4ylpP2P:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
71Pe4ylpP3P:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
72Pe4ylpP4P:1132-1215325.1.7.0325 → 325.1 → 325.1.7
73Pe4ylpP5P:1023-1131325.1.7.0325 → 325.1 → 325.1.7
74Pe4ylpP6P:811-894275.1.1.0275 → 275.1 → 275.1.1
75Pe4ylpP7P:15-3414246.1.1.04246 → 4246.1 → 4246.1.1
76Pe4ylpP8P:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
77Pe4ylpP9P:932-1022325.1.7.0325 → 325.1 → 325.1.7
78Qe4ylpQ1Q:2-91RNA_pol_Rpb6152 → 152.1 → 152.1.2
79Re4ylpR1R:79-171,R:210-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
80Re4ylpR2R:448-479Sigma70_r3101 → 101.1 → 101.1.1
81Re4ylpR3R:480-613Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors