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PDB 5D4C

X-RAY DIFFRACTION3.30 Å0 chains54 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (54)

#ChainDomain IDRangeFamilyClassification
1Ae5d4cA1A:4-49,A:173-234RNA_pol_L305 → 305.1 → 305.1.1
2Ae5d4cA2A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be5d4cB1B:6-49,B:173-228RNA_pol_L305 → 305.1 → 305.1.1
4Be5d4cB2B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce5d4cC1C:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
6Ce5d4cC3C:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
7Ce5d4cC4C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
8Ce5d4cC5C:592-662325.1.7.0325 → 325.1 → 325.1.7
9Ce5d4cC6C:663-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
10Ce5d4cC7C:1-141,C:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
11Ce5d4cC8C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
12De5d4cD1D:166-207,D:390-395325.1.7.0325 → 325.1 → 325.1.7
13De5d4cD2D:396-448325.1.7.0325 → 325.1 → 325.1.7
14De5d4cD3D:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
15De5d4cD4D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
16De5d4cD5D:1270-1330325.1.7.0325 → 325.1 → 325.1.7
17De5d4cD6D:1110-1200275.1.1.0275 → 275.1 → 275.1.1
18De5d4cD7D:208-215,D:341-389325.1.7.0325 → 325.1 → 325.1.7
19De5d4cD8D:1201-1269,D:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
20De5d4cD9D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
21De5d4cD10D:610-653,D:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
22De5d4cD11D:3-165,D:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
23De5d4cD12D:216-340RPOC_hybrid325 → 325.1 → 325.1.6
24Ee5d4cE1E:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe5d4cF1F:258-318Sigma70_r3101 → 101.1 → 101.1.1
26Fe5d4cF2F:319-423Sigma70_r4101 → 101.1 → 101.1.1
27Fe5d4cF3F:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
28Ke5d4cK1K:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
29Ke5d4cK2K:4-49,K:173-234RNA_pol_L305 → 305.1 → 305.1.1
30Le5d4cL1L:6-49,L:173-228RNA_pol_L305 → 305.1 → 305.1.1
31Le5d4cL2L:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
32Me5d4cM1M:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
33Me5d4cM2M:592-662325.1.7.0325 → 325.1 → 325.1.7
34Me5d4cM3M:1-94,M:115-141,M:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
35Me5d4cM4M:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
36Me5d4cM5M:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
37Me5d4cM7M:663-700,M:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
38Me5d4cM8M:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
39Ne5d4cN1N:216-340RPOC_hybrid325 → 325.1 → 325.1.6
40Ne5d4cN2N:3-165,N:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
41Ne5d4cN3N:1201-1269,N:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
42Ne5d4cN4N:1270-1330325.1.7.0325 → 325.1 → 325.1.7
43Ne5d4cN5N:396-448325.1.7.0325 → 325.1 → 325.1.7
44Ne5d4cN6N:1110-1200275.1.1.0275 → 275.1 → 275.1.1
45Ne5d4cN7N:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
46Ne5d4cN8N:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
47Ne5d4cN9N:610-653,N:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
48Ne5d4cN10N:208-215,N:341-389325.1.7.0325 → 325.1 → 325.1.7
49Ne5d4cN11N:166-207,N:390-395325.1.7.0325 → 325.1 → 325.1.7
50Ne5d4cN12N:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
51Oe5d4cO1O:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Pe5d4cP1P:258-318Sigma70_r3101 → 101.1 → 101.1.1
53Pe5d4cP2P:319-423Sigma70_r4101 → 101.1 → 101.1.1
54Pe5d4cP3P:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors