PDB 5D4D
X-RAY DIFFRACTION3.00 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
Loading viewer...
Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
12 domainsChain Eview chain
1 domainChain Fview chain
3 domainsChain Kview chain
2 domainsChain Lview chain
2 domainsChain Mview chain
7 domainsChain Nview chain
12 domainsChain Oview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5d4dA1 | A:4-49,A:173-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e5d4dA2 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e5d4dB1 | B:6-49,B:173-228 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e5d4dB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e5d4dC1 | C:663-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 6 | C | e5d4dC3 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 7 | C | e5d4dC4 | C:1-141,C:331-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 8 | C | e5d4dC5 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 9 | C | e5d4dC6 | C:999-1118 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 10 | C | e5d4dC7 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 11 | C | e5d4dC8 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | D | e5d4dD1 | D:208-215,D:341-389 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 13 | D | e5d4dD2 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 14 | D | e5d4dD3 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 15 | D | e5d4dD4 | D:1201-1269,D:1331-1502 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 16 | D | e5d4dD5 | D:216-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 17 | D | e5d4dD6 | D:396-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e5d4dD7 | D:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | D | e5d4dD8 | D:3-165,D:449-609 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 20 | D | e5d4dD9 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 21 | D | e5d4dD10 | D:610-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 22 | D | e5d4dD11 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 23 | D | e5d4dD12 | D:166-207,D:390-395 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | E | e5d4dE1 | E:2-95 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e5d4dF1 | F:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 26 | F | e5d4dF2 | F:258-318 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 27 | F | e5d4dF3 | F:319-423 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 28 | K | e5d4dK1 | K:4-49,K:173-231 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 29 | K | e5d4dK2 | K:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 30 | L | e5d4dL1 | L:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 31 | L | e5d4dL2 | L:6-49,L:173-228 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 32 | M | e5d4dM1 | M:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 33 | M | e5d4dM2 | M:1-141,M:331-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 34 | M | e5d4dM3 | M:999-1118 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 35 | M | e5d4dM5 | M:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 36 | M | e5d4dM6 | M:663-700,M:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 37 | M | e5d4dM7 | M:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 38 | M | e5d4dM8 | M:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 39 | N | e5d4dN1 | N:1201-1269,N:1331-1500 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 40 | N | e5d4dN2 | N:622-653,N:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 41 | N | e5d4dN3 | N:396-447 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 42 | N | e5d4dN4 | N:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 43 | N | e5d4dN5 | N:209-216,N:341-388 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 44 | N | e5d4dN6 | N:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 45 | N | e5d4dN7 | N:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 46 | N | e5d4dN8 | N:217-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 47 | N | e5d4dN9 | N:166-208,N:389-395 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 48 | N | e5d4dN10 | N:3-165,N:448-621 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 49 | N | e5d4dN11 | N:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 50 | N | e5d4dN12 | N:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 51 | O | e5d4dO1 | O:2-95 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 52 | P | e5d4dP1 | P:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 53 | P | e5d4dP2 | P:318-371,P:395-423 | 101.1.1.0 | 101 → 101.1 → 101.1.1 |
| 54 | P | e5d4dP3 | P:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors