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PDB 5D4D

X-RAY DIFFRACTION3.00 Å0 chains54 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (54)

#ChainDomain IDRangeFamilyClassification
1Ae5d4dA1A:4-49,A:173-232RNA_pol_L305 → 305.1 → 305.1.1
2Ae5d4dA2A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be5d4dB1B:6-49,B:173-228RNA_pol_L305 → 305.1 → 305.1.1
4Be5d4dB2B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce5d4dC1C:663-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
6Ce5d4dC3C:592-662325.1.7.0325 → 325.1 → 325.1.7
7Ce5d4dC4C:1-141,C:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
8Ce5d4dC5C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
9Ce5d4dC6C:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
10Ce5d4dC7C:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
11Ce5d4dC8C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
12De5d4dD1D:208-215,D:341-389325.1.7.0325 → 325.1 → 325.1.7
13De5d4dD2D:1110-1200275.1.1.0275 → 275.1 → 275.1.1
14De5d4dD3D:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
15De5d4dD4D:1201-1269,D:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
16De5d4dD5D:216-340RPOC_hybrid325 → 325.1 → 325.1.6
17De5d4dD6D:396-448325.1.7.0325 → 325.1 → 325.1.7
18De5d4dD7D:1270-1330325.1.7.0325 → 325.1 → 325.1.7
19De5d4dD8D:3-165,D:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
20De5d4dD9D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
21De5d4dD10D:610-653,D:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
22De5d4dD11D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
23De5d4dD12D:166-207,D:390-395325.1.7.0325 → 325.1 → 325.1.7
24Ee5d4dE1E:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe5d4dF1F:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
26Fe5d4dF2F:258-318Sigma70_r3101 → 101.1 → 101.1.1
27Fe5d4dF3F:319-423Sigma70_r4101 → 101.1 → 101.1.1
28Ke5d4dK1K:4-49,K:173-231RNA_pol_L305 → 305.1 → 305.1.1
29Ke5d4dK2K:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
30Le5d4dL1L:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
31Le5d4dL2L:6-49,L:173-228RNA_pol_L305 → 305.1 → 305.1.1
32Me5d4dM1M:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
33Me5d4dM2M:1-141,M:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
34Me5d4dM3M:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
35Me5d4dM5M:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
36Me5d4dM6M:663-700,M:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
37Me5d4dM7M:592-662325.1.7.0325 → 325.1 → 325.1.7
38Me5d4dM8M:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
39Ne5d4dN1N:1201-1269,N:1331-1500RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
40Ne5d4dN2N:622-653,N:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
41Ne5d4dN3N:396-447325.1.7.0325 → 325.1 → 325.1.7
42Ne5d4dN4N:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
43Ne5d4dN5N:209-216,N:341-388325.1.7.0325 → 325.1 → 325.1.7
44Ne5d4dN6N:1270-1330325.1.7.0325 → 325.1 → 325.1.7
45Ne5d4dN7N:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
46Ne5d4dN8N:217-340RPOC_hybrid325 → 325.1 → 325.1.6
47Ne5d4dN9N:166-208,N:389-395325.1.7.0325 → 325.1 → 325.1.7
48Ne5d4dN10N:3-165,N:448-6214246.1.1.04246 → 4246.1 → 4246.1.1
49Ne5d4dN11N:1110-1200275.1.1.0275 → 275.1 → 275.1.1
50Ne5d4dN12N:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
51Oe5d4dO1O:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Pe5d4dP1P:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
53Pe5d4dP2P:318-371,P:395-423101.1.1.0101 → 101.1 → 101.1.1
54Pe5d4dP3P:258-317Sigma70_r3101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors