Home/PDB

PDB 5D4E

X-RAY DIFFRACTION3.10 Å0 chains54 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

All Domains (54)

#ChainDomain IDRangeFamilyClassification
1Ae5d4eA1A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
2Ae5d4eA2A:4-49,A:173-234RNA_pol_L305 → 305.1 → 305.1.1
3Be5d4eB1B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
4Be5d4eB2B:6-49,B:173-228RNA_pol_L305 → 305.1 → 305.1.1
5Ce5d4eC1C:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
6Ce5d4eC2C:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
7Ce5d4eC3C:592-662325.1.7.0325 → 325.1 → 325.1.7
8Ce5d4eC4C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
9Ce5d4eC6C:1-141,C:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
10Ce5d4eC7C:663-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
11Ce5d4eC8C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
12De5d4eD1D:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
13De5d4eD2D:1110-1200275.1.1.0275 → 275.1 → 275.1.1
14De5d4eD3D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
15De5d4eD4D:3-165,D:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
16De5d4eD5D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
17De5d4eD6D:166-207,D:390-395325.1.7.0325 → 325.1 → 325.1.7
18De5d4eD7D:1201-1269,D:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
19De5d4eD8D:216-340RPOC_hybrid325 → 325.1 → 325.1.6
20De5d4eD9D:1270-1330325.1.7.0325 → 325.1 → 325.1.7
21De5d4eD10D:610-653,D:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
22De5d4eD11D:396-448325.1.7.0325 → 325.1 → 325.1.7
23De5d4eD12D:208-215,D:341-389325.1.7.0325 → 325.1 → 325.1.7
24Ee5d4eE1E:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe5d4eF1F:258-318Sigma70_r3101 → 101.1 → 101.1.1
26Fe5d4eF2F:319-423Sigma70_r4101 → 101.1 → 101.1.1
27Fe5d4eF3F:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
28Ke5d4eK1K:4-49,K:173-234RNA_pol_L305 → 305.1 → 305.1.1
29Ke5d4eK2K:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
30Le5d4eL1L:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
31Le5d4eL2L:6-49,L:173-228RNA_pol_L305 → 305.1 → 305.1.1
32Me5d4eM1M:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
33Me5d4eM2M:663-700,M:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
34Me5d4eM4M:592-662325.1.7.0325 → 325.1 → 325.1.7
35Me5d4eM5M:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
36Me5d4eM6M:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
37Me5d4eM7M:1-141,M:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
38Me5d4eM8M:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
39Ne5d4eN1N:610-653,N:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
40Ne5d4eN2N:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
41Ne5d4eN3N:1201-1269,N:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
42Ne5d4eN4N:208-215,N:341-389325.1.7.0325 → 325.1 → 325.1.7
43Ne5d4eN5N:1110-1200275.1.1.0275 → 275.1 → 275.1.1
44Ne5d4eN6N:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
45Ne5d4eN7N:216-340RPOC_hybrid325 → 325.1 → 325.1.6
46Ne5d4eN8N:166-207,N:390-395325.1.7.0325 → 325.1 → 325.1.7
47Ne5d4eN9N:396-448325.1.7.0325 → 325.1 → 325.1.7
48Ne5d4eN10N:1270-1330325.1.7.0325 → 325.1 → 325.1.7
49Ne5d4eN11N:3-165,N:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
50Ne5d4eN12N:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
51Oe5d4eO1O:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Pe5d4eP1P:258-318Sigma70_r3101 → 101.1 → 101.1.1
53Pe5d4eP2P:319-423Sigma70_r4101 → 101.1 → 101.1.1
54Pe5d4eP3P:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors