PDB 5D9Q
X-RAY DIFFRACTION4.40 Å0 chains30 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Bview chain
1 domainChain Cview chain
1 domainChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
2 domainsChain Hview chain
2 domainsChain Iview chain
2 domainsChain Kview chain
1 domainChain Lview chain
2 domainsChain Mview chain
2 domainsChain Nview chain
2 domainsChain Oview chain
2 domainsAll Domains (30)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5d9qA1 | A:256-473 | GP120 | 259 → 259.1 → 259.1.1 |
| 2 | A | e5d9qA2 | A:32-119,A:203-255,A:474-503 | GP120 | 1061 → 1061.1 → 1061.1.1 |
| 3 | A | e5d9qA3 | A:120-202 | GP120 | 6173 → 6173.1 → 6173.1.1 |
| 4 | B | e5d9qB1 | B:519-544,B:569-663 | GP41 | 3567 → 3567.1 → 3567.1.1 |
| 5 | C | e5d9qC1 | C:519-544,C:569-663 | GP41 | 3567 → 3567.1 → 3567.1.1 |
| 6 | D | e5d9qD1 | D:1-198 | V-set | 11 → 11.1 → 11.1.1 |
| 7 | D | e5d9qD2 | D:199-300 | V-set | 11 → 11.1 → 11.1.1 |
| 8 | E | e5d9qE1 | E:8-108 | V-set | 11 → 11.1 → 11.1.1 |
| 9 | E | e5d9qE2 | E:109-210 | C1-set | 11 → 11.1 → 11.1.1 |
| 10 | F | e5d9qF1 | F:1-110 | V-set | 11 → 11.1 → 11.1.1 |
| 11 | F | e5d9qF2 | F:111-211 | C1-set | 11 → 11.1 → 11.1.1 |
| 12 | G | e5d9qG1 | G:32-119,G:203-255,G:474-503 | GP120 | 1061 → 1061.1 → 1061.1.1 |
| 13 | G | e5d9qG2 | G:120-202 | GP120 | 6173 → 6173.1 → 6173.1.1 |
| 14 | G | e5d9qG3 | G:256-473 | GP120 | 259 → 259.1 → 259.1.1 |
| 15 | H | e5d9qH1 | H:111-211 | C1-set | 11 → 11.1 → 11.1.1 |
| 16 | H | e5d9qH2 | H:1-110 | V-set | 11 → 11.1 → 11.1.1 |
| 17 | I | e5d9qI1 | I:199-300 | V-set | 11 → 11.1 → 11.1.1 |
| 18 | I | e5d9qI2 | I:1-198 | V-set | 11 → 11.1 → 11.1.1 |
| 19 | J | e5d9qJ1 | J:120-202 | GP120 | 6173 → 6173.1 → 6173.1.1 |
| 20 | J | e5d9qJ2 | J:256-473 | GP120 | 259 → 259.1 → 259.1.1 |
| 21 | J | e5d9qJ3 | J:32-119,J:203-255,J:474-503 | GP120 | 1061 → 1061.1 → 1061.1.1 |
| 22 | K | e5d9qK1 | K:519-544,K:569-663 | GP41 | 3567 → 3567.1 → 3567.1.1 |
| 23 | L | e5d9qL1 | L:8-108 | V-set | 11 → 11.1 → 11.1.1 |
| 24 | L | e5d9qL2 | L:109-210 | C1-set | 11 → 11.1 → 11.1.1 |
| 25 | M | e5d9qM1 | M:8-108 | V-set | 11 → 11.1 → 11.1.1 |
| 26 | M | e5d9qM2 | M:109-210 | C1-set | 11 → 11.1 → 11.1.1 |
| 27 | N | e5d9qN1 | N:1-110 | V-set | 11 → 11.1 → 11.1.1 |
| 28 | N | e5d9qN2 | N:111-211 | C1-set | 11 → 11.1 → 11.1.1 |
| 29 | O | e5d9qO1 | O:1-198 | V-set | 11 → 11.1 → 11.1.1 |
| 30 | O | e5d9qO2 | O:199-300 | V-set | 11 → 11.1 → 11.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors