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PDB 5DGF

X-RAY DIFFRACTION3.30 Å0 chains181 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (181)

#ChainDomain IDRangeFamilyClassification
1c0e5dgfc01c0:1-98S10_plectin101 → 101.1 → 101.1.2
2C0e5dgfC01C0:1-96S10_plectin101 → 101.1 → 101.1.2
3c1e5dgfc11c1:2-147Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
4C1e5dgfC11C1:2-156Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
5c2e5dgfc21c2:20-143Ribosomal_L7Ae301 → 301.1 → 301.1.1
6C2e5dgfC21C2:20-143Ribosomal_L7Ae301 → 301.1 → 301.1.1
7c3e5dgfc31c3:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
8c3e5dgfc32c3:83-151Ribosomal_S15616 → 616.1 → 616.1.1
9C3e5dgfC31C3:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
10C3e5dgfC32C3:83-151Ribosomal_S15616 → 616.1 → 616.1.1
11c4e5dgfc41c4:10-137Ribosomal_S112484 → 2484.1 → 2484.1.1
12C4e5dgfC41C4:11-137Ribosomal_S112484 → 2484.1 → 2484.1.1
13c5e5dgfc51c5:4-138Ribosomal_S19838 → 838.1 → 838.1.1
14C5e5dgfC51C5:8-131Ribosomal_S19838 → 838.1 → 838.1.1
15c6e5dgfc61c6:2-143Ribosomal_S9212 → 212.1 → 212.1.1
16C6e5dgfC61C6:3-143Ribosomal_S9212 → 212.1 → 212.1.1
17c7e5dgfc71c7:2-122Ribosomal_S17e101 → 101.1 → 101.1.17
18C7e5dgfC71C7:2-126Ribosomal_S17e101 → 101.1 → 101.1.17
19c8e5dgfc81c8:2-146Ribosomal_S13102 → 102.2 → 102.2.1
20C8e5dgfC81C8:2-146Ribosomal_S13102 → 102.2 → 102.2.1
21c9e5dgfc91c9:2-144Ribosomal_S19e101 → 101.1 → 101.1.2
22C9e5dgfC91C9:2-144Ribosomal_S19e101 → 101.1 → 101.1.2
23d0e5dgfd01d0:12-121Ribosomal_S10304 → 304.44 → 304.44.1
24D0e5dgfD01D0:15-121Ribosomal_S10304 → 304.44 → 304.44.1
25d1e5dgfd11d1:1-87Ribosomal_S21e3167 → 3167.1 → 3167.1.1
26D1e5dgfD11D1:1-87Ribosomal_S21e3167 → 3167.1 → 3167.1.1
27d2e5dgfd21d2:2-67Ribosomal_S8320 → 320.2 → 320.2.1
28d2e5dgfd22d2:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
29D2e5dgfD21D2:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
30D2e5dgfD22D2:2-67Ribosomal_S8320 → 320.2 → 320.2.1
31d3e5dgfd31d3:2-145Ribosom_S12_S232 → 2.1 → 2.1.1
32D3e5dgfD31D3:2-145Ribosom_S12_S232 → 2.1 → 2.1.1
33d4e5dgfd41d4:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
34D4e5dgfD41D4:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
35d5e5dgfd51d5:37-105Ribosomal_S25101 → 101.1 → 101.1.2
36D5e5dgfD51D5:36-105Ribosomal_S25101 → 101.1 → 101.1.2
37d6e5dgfd61d6:2-98Ribosomal_S26e377 → 377.1 → 377.1.1
38D6e5dgfD61D6:2-98Ribosomal_S26e377 → 377.1 → 377.1.1
39d7e5dgfd71d7:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
40D7e5dgfD71D7:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
41d8e5dgfd81d8:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
42D8e5dgfD81D8:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
43d9e5dgfd91d9:4-56Ribosomal_S14377 → 377.1 → 377.1.1
44D9e5dgfD91D9:4-56Ribosomal_S14377 → 377.1 → 377.1.1
45e0e5dgfe01e0:2-63Ribosomal_S303168 → 3168.1 → 3168.1.1
46E0e5dgfE01E0:2-61Ribosomal_S303168 → 3168.1 → 3168.1.1
47e1e5dgfe11e1:77-152Ribosomal_S27375 → 375.1 → 375.1.1
48E1e5dgfE11E1:82-152Ribosomal_S27375 → 375.1 → 375.1.1
49fe5dgff1f:85-157eIF-5a2 → 2.1 → 2.1.1
50fe5dgff2f:10-84IF5A-like_N4 → 4.1 → 4.1.1
51l2e5dgfl21l2:2-98Ribosomal_L22 → 2.1 → 2.1.1
52l2e5dgfl22l2:99-253Ribosomal_L2_C4 → 4.1 → 4.1.1
53L2e5dgfL21L2:2-98Ribosomal_L22 → 2.1 → 2.1.1
54L2e5dgfL22L2:99-253Ribosomal_L2_C4 → 4.1 → 4.1.1
55l3e5dgfl31l3:2-387Ribosomal_L31 → 1.1 → 1.1.7
56L3e5dgfL31L3:2-387Ribosomal_L31 → 1.1 → 1.1.7
57l4e5dgfl41l4:2-269Ribosomal_L47559 → 7559.1 → 7559.1.1
58l4e5dgfl42l4:270-362Ribos_L4_asso_C3319 → 3319.1 → 3319.1.1
59L4e5dgfL41L4:2-269Ribosomal_L47559 → 7559.1 → 7559.1.1
60L4e5dgfL42L4:270-362Ribos_L4_asso_C3319 → 3319.1 → 3319.1.1
61l5e5dgfl51l5:4-297Ribosomal_L18_c,Ribosomal_L5e2484 → 2484.1 → 2484.1.1
62L5e5dgfL51L5:2-297Ribosomal_L18_c,Ribosomal_L5e2484 → 2484.1 → 2484.1.1
63l6e5dgfl61l6:2-176Ribosomal_L6e4 → 4.1 → 4.1.1
64L6e5dgfL61L6:2-109,L6:129-176Ribosomal_L6e4 → 4.1 → 4.1.1
65l7e5dgfl71l7:22-244Ribosomal_L30,Ribosomal_L30_N887 → 887.1 → 887.1.1
66L7e5dgfL71L7:23-244Ribosomal_L30,Ribosomal_L30_N887 → 887.1 → 887.1.1
67l8e5dgfl81l8:24-254Ribosomal_L7Ae301 → 301.1 → 301.1.1
68L8e5dgfL81L8:24-256Ribosomal_L7Ae301 → 301.1 → 301.1.1
69l9e5dgfl91l9:1-85Ribosomal_L6318 → 318.1 → 318.1.1
70l9e5dgfl92l9:86-191Ribosomal_L6318 → 318.1 → 318.1.1
71L9e5dgfL91L9:86-191Ribosomal_L6318 → 318.1 → 318.1.1
72L9e5dgfL92L9:1-85Ribosomal_L6318 → 318.1 → 318.1.1
73m0e5dgfm01m0:2-221Ribosomal_L16325 → 325.1 → 325.1.5
74M0e5dgfM01M0:2-221Ribosomal_L16325 → 325.1 → 325.1.5
75m1e5dgfm11m1:6-174Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
76M1e5dgfM11M1:6-174Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
77m3e5dgfm31m3:2-195Ribosomal_L13e3210 → 3210.1 → 3210.1.1
78M3e5dgfM31M3:2-194Ribosomal_L13e3210 → 3210.1 → 3210.1.1
79m4e5dgfm41m4:2-138KOW,Ribosomal_L14e4 → 4.1 → 4.1.1
80M4e5dgfM41M4:3-138KOW,Ribosomal_L14e4 → 4.1 → 4.1.1
81m5e5dgfm51m5:2-204Ribosomal_L15e304 → 304.109 → 304.109.1
82M5e5dgfM51M5:2-204Ribosomal_L15e304 → 304.109 → 304.109.1
83m6e5dgfm61m6:3-199Ribosomal_L132490 → 2490.2 → 2490.2.1
84M6e5dgfM61M6:3-199Ribosomal_L132490 → 2490.2 → 2490.2.1
85m7e5dgfm71m7:2-156Ribosomal_L22218 → 218.2 → 218.2.1
86M7e5dgfM71M7:2-184Ribosomal_L22218 → 218.2 → 218.2.1
87m8e5dgfm81m8:2-186Ribosomal_L182490 → 2490.3 → 2490.3.1
88M8e5dgfM81M8:2-186Ribosomal_L182490 → 2490.3 → 2490.3.1
89m9e5dgfm91m9:2-56Ribosomal_L19e637 → 637.1 → 637.1.1
90m9e5dgfm92m9:57-189Ribosomal_L19e_C3050 → 3050.1 → 3050.1.1
91M9e5dgfM91M9:2-56Ribosomal_L19e637 → 637.1 → 637.1.1
92M9e5dgfM92M9:57-189Ribosomal_L19e_C3050 → 3050.1 → 3050.1.1
93n0e5dgfn01n0:70-172Ribosomal_L18A3115 → 3115.1 → 3115.1.1
94n0e5dgfn02n0:1-693115.1.1.03115 → 3115.1 → 3115.1.1
95N0e5dgfN01N0:70-172Ribosomal_L18A3115 → 3115.1 → 3115.1.1
96N0e5dgfN02N0:1-693115.1.1.03115 → 3115.1 → 3115.1.1
97n1e5dgfn11n1:2-160Ribosomal_L21e4 → 4.1 → 4.1.1
98N1e5dgfN11N1:2-160Ribosomal_L21e4 → 4.1 → 4.1.1
99n2e5dgfn21n2:11-108Ribosomal_L22e3715 → 3715.1 → 3715.1.1
100N2e5dgfN21N2:9-108Ribosomal_L22e3715 → 3715.1 → 3715.1.1
101n3e5dgfn31n3:2-137Ribosomal_L143174 → 3174.1 → 3174.1.1
102N3e5dgfN31N3:2-137Ribosomal_L143174 → 3174.1 → 3174.1.1
103n4e5dgfn41n4:1-135Ribosomal_L24e377 → 377.1 → 377.1.1
104N4e5dgfN41N4:1-98Ribosomal_L24e377 → 377.1 → 377.1.1
105n5e5dgfn51n5:23-142Ribosomal_L23,Ribosomal_L23eN304 → 304.109 → 304.109.1
106N5e5dgfN51N5:22-142Ribosomal_L23,Ribosomal_L23eN304 → 304.109 → 304.109.1
107n6e5dgfn61n6:2-127KOW, Ribosomal_L264 → 4.1 → 4.1.1
108N6e5dgfN61N6:2-127KOW, Ribosomal_L264 → 4.1 → 4.1.1
109n7e5dgfn71n7:2-136Ribosomal_L27e4 → 4.1 → 4.1.1
110N7e5dgfN71N7:2-136Ribosomal_L27e4 → 4.1 → 4.1.1
111n8e5dgfn81n8:2-149Ribosomal_L27A2490 → 2490.3 → 2490.3.1
112N8e5dgfN81N8:2-149Ribosomal_L27A2490 → 2490.3 → 2490.3.1
113n9e5dgfn91n9:2-59Ribosomal_L29e3212 → 3212.1 → 3212.1.1
114N9e5dgfN91N9:2-59Ribosomal_L29e3212 → 3212.1 → 3212.1.1
115o0e5dgfo01o0:6-105Ribosomal_L7Ae301 → 301.1 → 301.1.1
116O0e5dgfO01O0:9-105Ribosomal_L7Ae301 → 301.1 → 301.1.1
117o1e5dgfo11o1:4-112Ribosomal_L31e259 → 259.1 → 259.1.1
118O1e5dgfO11O1:4-112Ribosomal_L31e259 → 259.1 → 259.1.1
119o2e5dgfo21o2:2-128Ribosomal_L32e2490 → 2490.1 → 2490.1.1
120O2e5dgfO21O2:2-128Ribosomal_L32e2490 → 2490.1 → 2490.1.1
121o3e5dgfo31o3:2-107Ribosomal_L35Ae1 → 1.1 → 1.1.7
122O3e5dgfO31O3:2-107Ribosomal_L35Ae1 → 1.1 → 1.1.7
123o4e5dgfo41o4:2-113Ribosomal_L34e377 → 377.12 → 377.12.1
124O4e5dgfO41O4:2-113Ribosomal_L34e377 → 377.12 → 377.12.1
125o5e5dgfo51o5:2-120Ribosomal_L29192 → 192.4 → 192.4.1
126O5e5dgfO51O5:2-120Ribosomal_L29192 → 192.4 → 192.4.1
127o6e5dgfo61o6:2-100Ribosomal_L36e3166 → 3166.1 → 3166.1.1
128O6e5dgfO61O6:2-100Ribosomal_L36e3166 → 3166.1 → 3166.1.1
129o7e5dgfo71o7:2-88Ribosomal_L37e375 → 375.1 → 375.1.1
130O7e5dgfO71O7:2-88Ribosomal_L37e375 → 375.1 → 375.1.1
131o8e5dgfo81o8:2-78Ribosomal_L38e896 → 896.1 → 896.1.1
132O8e5dgfO81O8:2-78Ribosomal_L38e896 → 896.1 → 896.1.1
133o9e5dgfo91o9:2-51Ribosomal_L39585 → 585.1 → 585.1.1
134O9e5dgfO91O9:2-51Ribosomal_L39585 → 585.1 → 585.1.1
135p0e5dgfp01p0:3-107,p0:184-198Ribosomal_L10304 → 304.60 → 304.60.1
136q0e5dgfq01q0:77-128Ribosomal_L40e375 → 375.1 → 375.1.1
137Q0e5dgfQ01Q0:77-128Ribosomal_L40e375 → 375.1 → 375.1.1
138q1e5dgfq11q1:1-25Ribosomal_L416069 → 6069.1 → 6069.1.1
139Q1e5dgfQ11Q1:1-25Ribosomal_L416069 → 6069.1 → 6069.1.1
140q2e5dgfq21q2:2-106Ribosomal_L44375 → 375.1 → 375.1.1
141Q2e5dgfQ21Q2:2-106Ribosomal_L44375 → 375.1 → 375.1.1
142q3e5dgfq31q3:2-92Ribosomal_L37ae375 → 375.1 → 375.1.1
143Q3e5dgfQ31Q3:2-92Ribosomal_L37ae375 → 375.1 → 375.1.1
144s0e5dgfs01s0:2-207Ribosomal_S22007 → 2007.6 → 2007.6.1
145S0e5dgfS01S0:2-207Ribosomal_S22007 → 2007.6 → 2007.6.1
146s1e5dgfs11s1:114-235Ribosomal_S3Ae230 → 230.6 → 230.6.1
147s1e5dgfs12s1:20-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
148S1e5dgfS11S1:114-233Ribosomal_S3Ae230 → 230.6 → 230.6.1
149S1e5dgfS12S1:20-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
150s2e5dgfs21s2:109-175Ribosomal_S5330 → 330.1 → 330.1.1
151s2e5dgfs22s2:176-250Ribosomal_S5_C212 → 212.1 → 212.1.1
152s2e5dgfs23s2:34-108Ribosomal_S53274 → 3274.1 → 3274.1.1
153S2e5dgfS21S2:109-175Ribosomal_S5330 → 330.1 → 330.1.1
154S2e5dgfS22S2:34-108Ribosomal_S53274 → 3274.1 → 3274.1.1
155S2e5dgfS23S2:176-250Ribosomal_S5_C212 → 212.1 → 212.1.1
156s3e5dgfs31s3:3-91KH_2327 → 327.11 → 327.11.1
157s3e5dgfs32s3:92-225Ribosomal_S3_C230 → 230.2 → 230.2.1
158S3e5dgfS31S3:92-225Ribosomal_S3_C230 → 230.2 → 230.2.1
159S3e5dgfS32S3:3-91KH_2327 → 327.11 → 327.11.1
160s4e5dgfs41s4:176-261KOW,40S_S4_C4 → 4.1 → 4.1.1
161s4e5dgfs42s4:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
162s4e5dgfs43s4:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
163S4e5dgfS41S4:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
164S4e5dgfS42S4:176-261KOW,40S_S4_C4 → 4.1 → 4.1.1
165S4e5dgfS43S4:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
166s5e5dgfs51s5:20-225Ribosomal_S7167 → 167.1 → 167.1.1
167S5e5dgfS51S5:20-225Ribosomal_S7167 → 167.1 → 167.1.1
168s6e5dgfs61s6:1-218Ribosomal_S6e239 → 239.1 → 239.1.1
169S6e5dgfS61S6:1-226Ribosomal_S6e239 → 239.1 → 239.1.1
170s7e5dgfs71s7:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
171s7e5dgfs72s7:2-105Ribosomal_S7e327 → 327.18 → 327.18.1
172S7e5dgfS71S7:4-105Ribosomal_S7e327 → 327.18 → 327.18.1
173S7e5dgfS72S7:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
174s8e5dgfs81s8:2-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
175S8e5dgfS81S8:2-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
176s9e5dgfs91s9:2-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
177S9e5dgfS91S9:2-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
178sMe5dgfsM1sM:9-1413451.1.1.03451 → 3451.1 → 3451.1.1
179SMe5dgfSM1SM:9-1413451.1.1.03451 → 3451.1 → 3451.1.1
180sRe5dgfsR1sR:2-319WD405 → 5.1 → 5.1.4
181SRe5dgfSR1SR:2-319WD405 → 5.1 → 5.1.4

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors