Home/PDB

PDB 5FDV

X-RAY DIFFRACTION2.80 Å0 chains112 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

All Domains (112)

#ChainDomain IDRangeFamilyClassification
110e5fdv10110:8-84Ribosomal_L27325 → 325.1 → 325.1.8
211e5fdv11111:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
312e5fdv12112:1-70Ribosomal_L29192 → 192.4 → 192.4.1
413e5fdv13113:2-60Ribosomal_L30887 → 887.1 → 887.1.1
514e5fdv14114:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
615e5fdv15115:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
716e5fdv16116:2-54Ribosomal_L33375 → 375.1 → 375.1.1
817e5fdv17117:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
918e5fdv18118:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
1019e5fdv19119:1-37Ribosomal_L36919 → 919.1 → 919.1.1
111be5fdv1b11b:7-237Ribosomal_S22007 → 2007.6 → 2007.6.1
121ce5fdv1c11c:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
131ce5fdv1c21c:2-106KH_2327 → 327.11 → 327.11.1
141de5fdv1d11d:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
151De5fdv1D11D:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
161De5fdv1D21D:2-126Ribosomal_L22 → 2.1 → 2.1.1
171ee5fdv1e11e:74-152Ribosomal_S5_C212 → 212.1 → 212.1.1
181ee5fdv1e21e:5-73Ribosomal_S5330 → 330.1 → 330.1.1
191Ee5fdv1E11E:1-204Ribosomal_L31 → 1.1 → 1.1.7
201fe5fdv1f11f:1-100Ribosomal_S6304 → 304.12 → 304.12.1
211Fe5fdv1F11F:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
221ge5fdv1g11g:2-156Ribosomal_S7167 → 167.1 → 167.1.1
231Ge5fdv1G11G:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
241he5fdv1h11h:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
251he5fdv1h21h:2-66Ribosomal_S8320 → 320.2 → 320.2.1
261He5fdv1H11H:2-82Ribosomal_L6318 → 318.1 → 318.1.1
271He5fdv1H21H:83-175Ribosomal_L6318 → 318.1 → 318.1.1
281ie5fdv1i11i:2-128Ribosomal_S9212 → 212.1 → 212.1.1
291Ie5fdv1I11I:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
301Ie5fdv1I21I:54-147Ribosomal_L9_C523 → 523.1 → 523.1.1
311je5fdv1j11j:4-100Ribosomal_S10304 → 304.44 → 304.44.1
321ke5fdv1k11k:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
331le5fdv1l11l:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
341me5fdv1m11m:2-117Ribosomal_S13102 → 102.2 → 102.2.1
351ne5fdv1n11n:2-61Ribosomal_S14377 → 377.1 → 377.1.1
361Ne5fdv1N11N:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
371oe5fdv1o11o:2-89Ribosomal_S15616 → 616.1 → 616.1.1
381Oe5fdv1O11O:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
391pe5fdv1p11p:1-82Ribosomal_S16837 → 837.1 → 837.1.1
401Pe5fdv1P11P:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
411qe5fdv1q11q:2-100Ribosomal_S172 → 2.1 → 2.1.1
421Qe5fdv1Q11Q:1-141Ribosomal_L16325 → 325.1 → 325.1.5
431re5fdv1r11r:20-87Ribosomal_S18101 → 101.1 → 101.1.1
441Re5fdv1R11R:1-118Ribosomal_L17218 → 218.3 → 218.3.1
451se5fdv1s11s:2-84Ribosomal_S19838 → 838.1 → 838.1.1
461Se5fdv1S11S:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
471te5fdv1t11t:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
481Te5fdv1T11T:1-131Ribosomal_L194 → 4.1 → 4.1.1
491Ue5fdv1U11U:2-117Ribosomal_L20143 → 143.2 → 143.2.1
501Ve5fdv1V11V:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
511We5fdv1W11W:1-112Ribosomal_L22218 → 218.2 → 218.2.1
521xe5fdv1x11x:2-98Ribosomal_S30AE330 → 330.2 → 330.2.1
531Xe5fdv1X11X:1-95Ribosomal_L23304 → 304.109 → 304.109.1
541Ye5fdv1Y11Y:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
551Ze5fdv1Z11Z:93-203Ribosomal_TL5_C240 → 240.1 → 240.1.1
561Ze5fdv1Z21Z:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
5720e5fdv20120:8-84Ribosomal_L27325 → 325.1 → 325.1.8
5821e5fdv21121:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
5922e5fdv22122:1-70Ribosomal_L29192 → 192.4 → 192.4.1
6023e5fdv23123:2-60Ribosomal_L30887 → 887.1 → 887.1.1
6124e5fdv24124:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
6225e5fdv25125:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
6326e5fdv26126:2-54Ribosomal_L33375 → 375.1 → 375.1.1
6427e5fdv27127:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
6528e5fdv28128:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
6629e5fdv29129:1-37Ribosomal_L36919 → 919.1 → 919.1.1
672be5fdv2b12b:7-237Ribosomal_S22007 → 2007.6 → 2007.6.1
682ce5fdv2c12c:2-106KH_2327 → 327.11 → 327.11.1
692ce5fdv2c22c:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
702de5fdv2d12d:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
712De5fdv2D12D:2-126Ribosomal_L22 → 2.1 → 2.1.1
722De5fdv2D22D:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
732ee5fdv2e12e:5-73Ribosomal_S5330 → 330.1 → 330.1.1
742ee5fdv2e22e:74-152Ribosomal_S5_C212 → 212.1 → 212.1.1
752Ee5fdv2E12E:1-204Ribosomal_L31 → 1.1 → 1.1.7
762fe5fdv2f12f:1-100Ribosomal_S6304 → 304.12 → 304.12.1
772Fe5fdv2F12F:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
782ge5fdv2g12g:2-156Ribosomal_S7167 → 167.1 → 167.1.1
792Ge5fdv2G12G:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
802he5fdv2h12h:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
812he5fdv2h22h:2-66Ribosomal_S8320 → 320.2 → 320.2.1
822He5fdv2H12H:83-175Ribosomal_L6318 → 318.1 → 318.1.1
832He5fdv2H22H:3-82Ribosomal_L6318 → 318.1 → 318.1.1
842ie5fdv2i12i:2-127Ribosomal_S9212 → 212.1 → 212.1.1
852Ie5fdv2I12I:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
862Ie5fdv2I22I:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
872je5fdv2j12j:5-100Ribosomal_S10304 → 304.44 → 304.44.1
882ke5fdv2k12k:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
892le5fdv2l12l:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
902me5fdv2m12m:3-116Ribosomal_S13102 → 102.2 → 102.2.1
912ne5fdv2n12n:2-61Ribosomal_S14377 → 377.1 → 377.1.1
922Ne5fdv2N12N:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
932oe5fdv2o12o:2-89Ribosomal_S15616 → 616.1 → 616.1.1
942Oe5fdv2O12O:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
952pe5fdv2p12p:1-82Ribosomal_S16837 → 837.1 → 837.1.1
962Pe5fdv2P12P:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
972qe5fdv2q12q:2-100Ribosomal_S172 → 2.1 → 2.1.1
982Qe5fdv2Q12Q:1-141Ribosomal_L16325 → 325.1 → 325.1.5
992re5fdv2r12r:20-87Ribosomal_S18101 → 101.1 → 101.1.1
1002Re5fdv2R12R:1-118Ribosomal_L17218 → 218.3 → 218.3.1
1012se5fdv2s12s:2-84Ribosomal_S19838 → 838.1 → 838.1.1
1022Se5fdv2S12S:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
1032te5fdv2t12t:6-103Ribosomal_S20p604 → 604.9 → 604.9.1
1042Te5fdv2T12T:1-131Ribosomal_L194 → 4.1 → 4.1.1
1052Ue5fdv2U12U:2-117Ribosomal_L20143 → 143.2 → 143.2.1
1062Ve5fdv2V12V:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
1072We5fdv2W12W:1-112Ribosomal_L22218 → 218.2 → 218.2.1
1082xe5fdv2x12x:3-98Ribosomal_S30AE330 → 330.2 → 330.2.1
1092Xe5fdv2X12X:1-95Ribosomal_L23304 → 304.109 → 304.109.1
1102Ye5fdv2Y12Y:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
1112Ze5fdv2Z12Z:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
1122Ze5fdv2Z22Z:93-201Ribosomal_TL5_C240 → 240.1 → 240.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors