PDB 5GM6
ELECTRON MICROSCOPY0 chains73 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsChain Aview chain
6 domainsChain bview chain
1 domainChain Bview chain
13 domainsChain cview chain
2 domainsChain Cview chain
5 domainsChain dview chain
1 domainChain eview chain
2 domainsChain Fview chain
4 domainsChain gview chain
1 domainChain Gview chain
1 domainChain hview chain
1 domainChain iview chain
1 domainChain Iview chain
1 domainChain jview chain
1 domainChain Jview chain
3 domainsChain kview chain
1 domainChain Kview chain
1 domainChain lview chain
1 domainChain mview chain
1 domainChain nview chain
1 domainChain oview chain
2 domainsChain Oview chain
1 domainChain pview chain
2 domainsChain qview chain
2 domainsChain Qview chain
2 domainsChain rview chain
1 domainChain Rview chain
2 domainsChain Tview chain
1 domainChain Uview chain
1 domainChain vview chain
1 domainChain Vview chain
1 domainChain Xview chain
1 domainChain Yview chain
4 domainsChain Zview chain
2 domainsAll Domains (73)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5gm6a1 | a:172-259 | zf-C3HC4_2 | 376 → 376.1 → 376.1.1 |
| 2 | a | e5gm6a2 | a:126-171 | zf-CCCH | 906 → 906.1 → 906.1.1 |
| 3 | A | e5gm6A1 | A:1829-2085 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 4 | A | e5gm6A2 | A:2149-2413 | PROCT | 2492 → 2492.1 → 2492.1.1 |
| 5 | A | e5gm6A3 | A:127-431,A:451-883 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 6 | A | e5gm6A4 | A:884-1255 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 7 | A | e5gm6A5 | A:1256-1574 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 8 | A | e5gm6A6 | A:1575-1828 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 9 | b | e5gm6b1 | b:4-170 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 10 | B | e5gm6B1 | B:420-700 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 11 | B | e5gm6B2 | B:1341-1541 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 12 | B | e5gm6B3 | B:701-907 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 13 | B | e5gm6B4 | B:1542-1741 | 2004.1.1.0 | 2004 → 2004.1 → 2004.1.1 |
| 14 | B | e5gm6B6 | B:1199-1340 | Sec63 | 11 → 11.1 → 11.1.1 |
| 15 | B | e5gm6B7 | B:1004-1142 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 16 | B | e5gm6B8 | B:907-1003 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 17 | B | e5gm6B9 | B:2049-2163 | Sec63 | 11 → 11.1 → 11.1.1 |
| 18 | B | e5gm6B11 | B:113-192 | BRR2_plug | 592 → 592.6 → 592.6.1 |
| 19 | B | e5gm6B12 | B:1142-1199 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 20 | B | e5gm6B13 | B:1989-2049 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 21 | B | e5gm6B5 | B:1825-1989 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 22 | B | e5gm6B10 | B:1740-1824 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 23 | c | e5gm6c1 | c:9-59 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 24 | c | e5gm6c2 | c:60-111 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 25 | C | e5gm6C1 | C:118-456 | GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 26 | C | e5gm6C2 | C:677-857 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 27 | C | e5gm6C3 | C:588-676 | 304.24.1.0 | 304 → 304.24 → 304.24.1 |
| 28 | C | e5gm6C4 | C:858-975 | EFG_C | 304 → 304.24 → 304.24.1 |
| 29 | C | e5gm6C5 | C:457-510,C:530-587 | 1.1.7.0 | 1 → 1.1 → 1.1.7 |
| 30 | d | e5gm6d1 | d:40-275,d:295-297 | HAT, HAT_Syf1_CNRKL1_N | 109 → 109.4 → 109.4.1 |
| 31 | e | e5gm6e1 | e:9-94 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 32 | e | e5gm6e2 | e:96-182 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 33 | F | e5gm6F1 | F:56-299,F:324-451,F:472-483 | MMS1_N | 5 → 5.1 → 5.1.4 |
| 34 | F | e5gm6F2 | F:852-890,F:918-1231 | CPSF_A | 5 → 5.1 → 5.1.4 |
| 35 | F | e5gm6F3 | F:1232-1261,F:1298-1361 | CPSF_A | 101 → 101.1 → 101.1.1 |
| 36 | F | e5gm6F4 | F:452-784,F:815-851 | Beta-prop_RSE1_2nd | 5 → 5.1 → 5.1.4 |
| 37 | g | e5gm6g1 | g:15-108 | LSM | 4 → 4.1 → 4.1.1 |
| 38 | G | e5gm6G1 | G:16-74,G:156-971 | PPP2R1A-like_HEAT | 109 → 109.4 → 109.4.1 |
| 39 | h | e5gm6h1 | h:12-83 | LSM | 4 → 4.1 → 4.1.1 |
| 40 | i | e5gm6i1 | i:10-92 | LSM | 4 → 4.1 → 4.1.1 |
| 41 | I | e5gm6I1 | I:1-105 | zf-met | 386 → 386.1 → 386.1.1 |
| 42 | j | e5gm6j1 | j:2-76 | LSM | 4 → 4.1 → 4.1.1 |
| 43 | J | e5gm6J1 | J:2-18,J:42-54,J:82-104 | PHF5 | 377 → 377.1 → 377.1.1 |
| 44 | J | e5gm6J2 | J:28-43,J:71-83 | 377.1.1.0 | 377 → 377.1 → 377.1.1 |
| 45 | J | e5gm6J3 | J:21-27,J:55-70 | 377.1.1.0 | 377 → 377.1 → 377.1.1 |
| 46 | k | e5gm6k1 | k:4-55,k:75-102 | LSM | 4 → 4.1 → 4.1.1 |
| 47 | K | e5gm6K1 | K:1-84 | SF3b10 | 1106 → 1106.1 → 1106.1.1 |
| 48 | l | e5gm6l1 | l:4-85 | LSM | 4 → 4.1 → 4.1.1 |
| 49 | m | e5gm6m1 | m:1-48,m:76-109 | LSM | 4 → 4.1 → 4.1.1 |
| 50 | n | e5gm6n1 | n:151-455 | WD40 | 5 → 5.1 → 5.1.4 |
| 51 | o | e5gm6o1 | o:1-61 | U-box | 376 → 376.1 → 376.1.1 |
| 52 | o | e5gm6o2 | o:144-493 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 53 | O | e5gm6O1 | O:111-447 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 54 | p | e5gm6p1 | p:1-61 | U-box | 376 → 376.1 → 376.1.1 |
| 55 | p | e5gm6p2 | p:144-493 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 56 | q | e5gm6q1 | q:1-61 | U-box | 376 → 376.1 → 376.1.1 |
| 57 | q | e5gm6q2 | q:144-493 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 58 | Q | e5gm6Q1 | Q:3-126 | STL11_N | 376 → 376.1 → 376.1.3 |
| 59 | Q | e5gm6Q2 | Q:202-264,Q:288-296 | 304.9.1.0 | 304 → 304.9 → 304.9.1 |
| 60 | r | e5gm6r1 | r:1-51 | U-box | 376 → 376.1 → 376.1.1 |
| 61 | R | e5gm6R1 | R:130-227 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 62 | R | e5gm6R2 | R:1-129 | Torus | 906 → 906.1 → 906.1.1 |
| 63 | T | e5gm6T1 | T:1-157 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 64 | U | e5gm6U1 | U:22-206 | FHA | 73 → 73.1 → 73.1.1 |
| 65 | v | e5gm6v1 | v:551-753 | HAT_Syf1_CNRKL1_C | 109 → 109.4 → 109.4.1 |
| 66 | V | e5gm6V1 | V:2-129 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 67 | X | e5gm6X1 | X:60-111 | cwf21 | 6026 → 6026.1 → 6026.1.1 |
| 68 | Y | e5gm6Y1 | Y:610-755 | HA2_N,HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 69 | Y | e5gm6Y2 | Y:402-574 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 70 | Y | e5gm6Y3 | Y:210-401,Y:575-609 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 71 | Y | e5gm6Y4 | Y:756-868 | OB_NTP_bind | 2 → 2.1 → 2.1.1 |
| 72 | Z | e5gm6Z1 | Z:8-247 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 73 | Z | e5gm6Z2 | Z:279-485 | MA3 | 109 → 109.4 → 109.4.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors