PDB 5GPN
ELECTRON MICROSCOPY0 chains92 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsAll Domains (92)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e5gpn01 | 0:1-261 | COX3 | 5039 → 5039.1 → 5039.1.1 |
| 2 | 1 | e5gpn11 | 1:4-147 | COX4 | 5003 → 5003.1 → 5003.1.1 |
| 3 | 2 | e5gpn21 | 2:1-109 | COX5A | 109 → 109.7 → 109.7.1 |
| 4 | 3 | e5gpn31 | 3:1-98 | COX5B | 375 → 375.1 → 375.1.8 |
| 5 | 4 | e5gpn41 | 4:1-84 | COX6A | 5004 → 5004.1 → 5004.1.1 |
| 6 | 5 | e5gpn51 | 5:11-85 | COX6B | 540 → 540.1 → 540.1.1 |
| 7 | 6 | e5gpn61 | 6:1-73 | COX6C | 5005 → 5005.1 → 5005.1.1 |
| 8 | 7 | e5gpn71 | 7:1-56 | COX7a | 5006 → 5006.1 → 5006.1.1 |
| 9 | 8 | e5gpn81 | 8:6-54 | COX7B | 5007 → 5007.1 → 5007.1.1 |
| 10 | 9 | e5gpn91 | 9:1-47 | COX7C | 5008 → 5008.1 → 5008.1.1 |
| 11 | a | e5gpna1 | a:61-207 | Oxidored_q6 | 2007 → 2007.1 → 2007.1.3 |
| 12 | A | e5gpnA1 | A:234-446 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 13 | A | e5gpnA2 | A:1-233 | Peptidase_M16,Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 14 | Aa | e5gpnAa1 | Aa:74-154 | PP-binding | 132 → 132.1 → 132.1.1 |
| 15 | Ac | e5gpnAc1 | Ac:1-55 | MWFE | 1126 → 1126.1 → 1126.1.1 |
| 16 | Ae | e5gpnAe1 | Ae:11-98 | ETC_C1_NDUFA5 | 6004 → 6004.1 → 6004.1.1 |
| 17 | Af | e5gpnAf1 | Af:24-113 | Complex1_LYR | 1128 → 1128.1 → 1128.1.1 |
| 18 | Ai | e5gpnAi1 | Ai:52-189 | NDUF_B5 | 1127 → 1127.1 → 1127.1.1 |
| 19 | Aj | e5gpnAj1 | Aj:29-161 | NDUFB10 | 1130 → 1130.1 → 1130.1.1 |
| 20 | Ak | e5gpnAk1 | Ak:10-160 | Complex1_LYR | 1128 → 1128.1 → 1128.1.1 |
| 21 | Al | e5gpnAl1 | Al:5-100 | NDUF_C2 | 1131 → 1131.1 → 1131.1.1 |
| 22 | Am | e5gpnAm1 | Am:46-72 | NADH_dh_m_C1 | 1124 → 1124.1 → 1124.1.1 |
| 23 | An | e5gpnAn1 | An:4-172 | CHCH | 568 → 568.1 → 568.1.1 |
| 24 | b | e5gpnb1 | b:64-212 | Fer4+Fer4_7 | 205 → 205.1 → 205.1.1 |
| 25 | B | e5gpnB1 | B:21-235 | Peptidase_M16 | 309 → 309.1 → 309.1.1 |
| 26 | B | e5gpnB2 | B:236-439 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 27 | c | e5gpnc1 | c:47-273 | Complex1_51K | 4335 → 4335.1 → 4335.1.1 |
| 28 | c | e5gpnc2 | c:274-359 | SLBB_2 | 221 → 221.1 → 221.1.4 |
| 29 | c | e5gpnc3 | c:360-456 | NADH_4Fe-4S | 633 → 633.11 → 633.11.1 |
| 30 | C | e5gpnC1 | C:261-379 | Cytochrom_B_C | 5068 → 5068.1 → 5068.1.1 |
| 31 | C | e5gpnC2 | C:1-260 | Cytochrome_B, Cytochrom_B_N_2 | 5069 → 5069.1 → 5069.1.1 |
| 32 | d | e5gpnd1 | d:127-216 | 2Fe-2S_thioredx | 2485 → 2485.1 → 2485.1.1 |
| 33 | d | e5gpnd2 | d:48-126 | 2Fe-2S_thioredx | 3697 → 3697.1 → 3697.1.1 |
| 34 | D | e5gpnD1 | D:196-241 | 5013.1.1.0 | 5013 → 5013.1 → 5013.1.1 |
| 35 | D | e5gpnD2 | D:1-195 | Cytochrom_C1 | 107 → 107.1 → 107.1.1 |
| 36 | e | e5gpne1 | e:1-315 | NADHdh | 3281 → 3281.1 → 3281.1.2 |
| 37 | E | e5gpnE1 | E:1-69 | UCR_TM | 5014 → 5014.1 → 5014.1.1 |
| 38 | E | e5gpnE2 | E:70-196 | Rieske | 66 → 66.1 → 66.1.1 |
| 39 | f | e5gpnf1 | f:2-347 | Proton_antipo_M,NADH_dehy_S2_C | 3281 → 3281.1 → 3281.1.1 |
| 40 | F | e5gpnF1 | F:5-110 | UCR_14kD | 5070 → 5070.1 → 5070.1.1 |
| 41 | g | e5gpng1 | g:4-109 | Oxidored_q4 | 3456 → 3456.1 → 3456.1.1 |
| 42 | G | e5gpnG1 | G:1-81 | UcrQ | 5016 → 5016.1 → 5016.1.1 |
| 43 | h | e5gpnh1 | h:2-458 | Proton_antipo_M,Oxidored_q5_N | 3281 → 3281.1 → 3281.1.1 |
| 44 | H | e5gpnH1 | H:15-78 | UCR_hinge | 5071 → 5071.1 → 5071.1.1 |
| 45 | i | e5gpni1 | i:1-90 | Oxidored_q2 | 3843 → 3843.1 → 3843.1.1 |
| 46 | I | e5gpnI1 | I:46-78 | Ubiq-Cytc-red_N | 852 → 852.1 → 852.1.1 |
| 47 | j | e5gpnj1 | j:5-598 | Proton_antipo_M,Proton_antipo_N,NADH5_C | 3281 → 3281.1 → 3281.1.1 |
| 48 | J | e5gpnJ1 | J:1-62 | UCR_UQCRX_QCR9 | 5017 → 5017.1 → 5017.1.1 |
| 49 | k | e5gpnk1 | k:2-106,k:137-173 | Oxidored_q3 | 3579 → 3579.1 → 3579.1.1 |
| 50 | K | e5gpnK1 | K:2-44 | UCR_6-4kD | 5018 → 5018.1 → 5018.1.1 |
| 51 | l | e5gpnl1 | l:2-106,l:137-173 | Oxidored_q3 | 3579 → 3579.1 → 3579.1.1 |
| 52 | L | e5gpnL1 | L:1-62 | UCR_UQCRX_QCR9 | 5017 → 5017.1 → 5017.1.1 |
| 53 | m | e5gpnm1 | m:4-56 | NADHdh_A3 | 1122 → 1122.1 → 1122.1.1 |
| 54 | M | e5gpnM1 | M:1-233 | Peptidase_M16,Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 55 | M | e5gpnM2 | M:234-446 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 56 | n | e5gpnn1 | n:14-96 | L51_S25_CI-B8 | 2485 → 2485.1 → 2485.1.1 |
| 57 | N | e5gpnN1 | N:21-235 | Peptidase_M16 | 309 → 309.1 → 309.1.1 |
| 58 | N | e5gpnN2 | N:236-439 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 59 | o | e5gpno1 | o:18-68 | Ndufs5 | 5071 → 5071.2 → 5071.2.1 |
| 60 | O | e5gpnO1 | O:261-379 | Cytochrom_B_C | 5068 → 5068.1 → 5068.1.1 |
| 61 | O | e5gpnO2 | O:1-260 | Cytochrome_B, Cytochrom_B_N_2 | 5069 → 5069.1 → 5069.1.1 |
| 62 | p | e5gpnp1 | p:45-287,p:312-358 | Epimerase | 2003 → 2003.1 → 2003.1.1 |
| 63 | P | e5gpnP1 | P:1-195 | Cytochrom_C1 | 107 → 107.1 → 107.1.1 |
| 64 | P | e5gpnP2 | P:196-241 | 5013.1.1.0 | 5013 → 5013.1 → 5013.1.1 |
| 65 | q | e5gpnq1 | q:61-256 | dNK | 2004 → 2004.1 → 2004.1.1 |
| 66 | Q | e5gpnQ1 | Q:1-69 | UCR_TM | 5014 → 5014.1 → 5014.1.1 |
| 67 | Q | e5gpnQ2 | Q:70-196 | Rieske | 66 → 66.1 → 66.1.1 |
| 68 | r | e5gpnr1 | r:30-92 | GRIM-19 | 6055 → 6055.1 → 6055.1.1 |
| 69 | R | e5gpnR1 | R:5-110 | UCR_14kD | 5070 → 5070.1 → 5070.1.1 |
| 70 | s | e5gpns1 | s:1-43 | COX8 | 5009 → 5009.1 → 5009.1.1 |
| 71 | S | e5gpnS1 | S:1-78 | UcrQ | 5016 → 5016.1 → 5016.1.1 |
| 72 | t | e5gpnt1 | t:74-154 | PP-binding | 132 → 132.1 → 132.1.1 |
| 73 | T | e5gpnT1 | T:15-78 | UCR_hinge | 5071 → 5071.1 → 5071.1.1 |
| 74 | u | e5gpnu1 | u:52-189 | NDUF_B5 | 1127 → 1127.1 → 1127.1.1 |
| 75 | U | e5gpnU1 | U:46-78 | Ubiq-Cytc-red_N | 852 → 852.1 → 852.1.1 |
| 76 | v | e5gpnv1 | v:61-256 | dNK | 2004 → 2004.1 → 2004.1.1 |
| 77 | V | e5gpnV1 | V:9-45 | UCR_6-4kD | 5018 → 5018.1 → 5018.1.1 |
| 78 | w | e5gpnw1 | w:60-166 | NDUS4 | 3203 → 3203.1 → 3203.1.1 |
| 79 | W | e5gpnW1 | W:51-219 | Complex1_30kDa | 4272 → 4272.1 → 4272.1.1 |
| 80 | x | e5gpnx1 | x:74-119 | zf-CHCC | 375 → 375.1 → 375.1.8 |
| 81 | y | e5gpny1 | y:1-514 | COX1 | 5038 → 5038.1 → 5038.1.1 |
| 82 | Y | e5gpnY1 | Y:105-159 | NADH-G_4Fe-4S_3 | 5100 → 5100.1 → 5100.1.1 |
| 83 | Y | e5gpnY2 | Y:160-240 | Nqo3_Fer4 | 205 → 205.1 → 205.1.1 |
| 84 | Y | e5gpnY3 | Y:31-104 | Fer2_4 | 221 → 221.1 → 221.1.1 |
| 85 | Y | e5gpnY4 | Y:301-370,Y:519-716 | Molybdopterin,NADH_dhqG_C | 2003 → 2003.2 → 2003.2.1 |
| 86 | Y | e5gpnY5 | Y:371-518 | Molybdopterin | 2003 → 2003.2 → 2003.2.1 |
| 87 | Y | e5gpnY6 | Y:241-300 | NDSU1_4Fe-4S | 1001 → 1001.1 → 1001.1.1 |
| 88 | z | e5gpnz1 | z:91-227 | COX2 | 3156 → 3156.1 → 3156.1.1 |
| 89 | z | e5gpnz2 | z:1-90 | COX2_TM | 5040 → 5040.1 → 5040.1.1 |
| 90 | Z | e5gpnZ1 | Z:162-359 | Complex1_49kDa | 4025 → 4025.1 → 4025.1.1 |
| 91 | Z | e5gpnZ2 | Z:119-161,Z:360-432 | Complex1_49kDa | 244 → 244.4 → 244.4.1 |
| 92 | Z | e5gpnZ3 | Z:89-118,Z:433-463 | Complex1_49kDa | 244 → 244.4 → 244.4.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors