PDB 5I2D
X-RAY DIFFRACTION4.40 Å0 chains62 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Cview chain
7 domainsChain Dview chain
10 domainsChain Eview chain
1 domainChain Fview chain
3 domainsChain Gview chain
2 domainsChain Hview chain
2 domainsChain Nview chain
7 domainsChain Oview chain
10 domainsChain Pview chain
1 domainChain Qview chain
3 domainsChain Rview chain
2 domainsChain Sview chain
2 domainsAll Domains (62)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5i2dA1 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | A | e5i2dA2 | A:4-49,A:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 3 | A | e5i2dA3 | A:253-310 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 4 | B | e5i2dB1 | B:7-49,B:173-228 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | B | e5i2dB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 6 | B | e5i2dB3 | B:253-310 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 7 | C | e5i2dC1 | C:663-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 8 | C | e5i2dC2 | C:1-141,C:331-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 9 | C | e5i2dC3 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 10 | C | e5i2dC4 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 11 | C | e5i2dC6 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 12 | C | e5i2dC7 | C:999-1118 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 13 | C | e5i2dC8 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 14 | D | e5i2dD1 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 15 | D | e5i2dD2 | D:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 16 | D | e5i2dD3 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 17 | D | e5i2dD4 | D:611-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 18 | D | e5i2dD5 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 19 | D | e5i2dD6 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 20 | D | e5i2dD7 | D:1201-1269,D:1331-1502 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 21 | D | e5i2dD8 | D:166-216,D:364-394 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e5i2dD9 | D:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 23 | D | e5i2dD10 | D:3-165,D:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 24 | E | e5i2dE1 | E:2-95 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e5i2dF1 | F:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 26 | F | e5i2dF2 | F:258-318 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 27 | F | e5i2dF3 | F:319-423 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 28 | G | e5i2dG1 | G:110-195 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
| 29 | G | e5i2dG2 | G:1-109 | cNMP_binding | 10 → 10.12 → 10.12.1 |
| 30 | H | e5i2dH1 | H:110-195 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
| 31 | H | e5i2dH2 | H:1-109 | cNMP_binding | 10 → 10.12 → 10.12.1 |
| 32 | L | e5i2dL1 | L:4-49,L:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 33 | L | e5i2dL2 | L:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 34 | L | e5i2dL3 | L:253-310 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 35 | M | e5i2dM1 | M:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 36 | M | e5i2dM2 | M:7-49,M:173-228 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 37 | M | e5i2dM3 | M:253-310 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 38 | N | e5i2dN1 | N:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 39 | N | e5i2dN2 | N:663-700,N:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 40 | N | e5i2dN4 | N:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 41 | N | e5i2dN5 | N:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 42 | N | e5i2dN6 | N:999-1118 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 43 | N | e5i2dN7 | N:1-141,N:331-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 44 | N | e5i2dN8 | N:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 45 | O | e5i2dO1 | O:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 46 | O | e5i2dO2 | O:166-216,O:364-394 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 47 | O | e5i2dO3 | O:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 48 | O | e5i2dO4 | O:611-653,O:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 49 | O | e5i2dO5 | O:1201-1269,O:1331-1502 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 50 | O | e5i2dO6 | O:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 51 | O | e5i2dO7 | O:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 52 | O | e5i2dO8 | O:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 53 | O | e5i2dO9 | O:3-165,O:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 54 | O | e5i2dO10 | O:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 55 | P | e5i2dP1 | P:2-95 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 56 | Q | e5i2dQ1 | Q:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 57 | Q | e5i2dQ2 | Q:318-423 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 58 | Q | e5i2dQ3 | Q:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 59 | R | e5i2dR1 | R:1-109 | cNMP_binding | 10 → 10.12 → 10.12.1 |
| 60 | R | e5i2dR2 | R:110-195 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
| 61 | S | e5i2dS1 | S:110-195 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
| 62 | S | e5i2dS2 | S:1-109 | cNMP_binding | 10 → 10.12 → 10.12.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors