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PDB 5I2D

X-RAY DIFFRACTION4.40 Å0 chains62 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (62)

#ChainDomain IDRangeFamilyClassification
1Ae5i2dA1A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
2Ae5i2dA2A:4-49,A:173-229RNA_pol_L305 → 305.1 → 305.1.1
3Ae5i2dA3A:253-310RNA_pol_A_CTD102 → 102.1 → 102.1.1
4Be5i2dB1B:7-49,B:173-228RNA_pol_L305 → 305.1 → 305.1.1
5Be5i2dB2B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
6Be5i2dB3B:253-310RNA_pol_A_CTD102 → 102.1 → 102.1.1
7Ce5i2dC1C:663-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
8Ce5i2dC2C:1-141,C:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
9Ce5i2dC3C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
10Ce5i2dC4C:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
11Ce5i2dC6C:592-662325.1.7.0325 → 325.1 → 325.1.7
12Ce5i2dC7C:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
13Ce5i2dC8C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
14De5i2dD1D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
15De5i2dD2D:395-448325.1.7.0325 → 325.1 → 325.1.7
16De5i2dD3D:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
17De5i2dD4D:611-653,D:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
18De5i2dD5D:1110-1200275.1.1.0275 → 275.1 → 275.1.1
19De5i2dD6D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
20De5i2dD7D:1201-1269,D:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
21De5i2dD8D:166-216,D:364-394325.1.7.0325 → 325.1 → 325.1.7
22De5i2dD9D:1270-1330325.1.7.0325 → 325.1 → 325.1.7
23De5i2dD10D:3-165,D:449-610RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
24Ee5i2dE1E:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe5i2dF1F:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
26Fe5i2dF2F:258-318Sigma70_r3101 → 101.1 → 101.1.1
27Fe5i2dF3F:319-423Sigma70_r4101 → 101.1 → 101.1.1
28Ge5i2dG1G:110-195HTH_Crp_2101 → 101.1 → 101.1.2
29Ge5i2dG2G:1-109cNMP_binding10 → 10.12 → 10.12.1
30He5i2dH1H:110-195HTH_Crp_2101 → 101.1 → 101.1.2
31He5i2dH2H:1-109cNMP_binding10 → 10.12 → 10.12.1
32Le5i2dL1L:4-49,L:173-229RNA_pol_L305 → 305.1 → 305.1.1
33Le5i2dL2L:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
34Le5i2dL3L:253-310RNA_pol_A_CTD102 → 102.1 → 102.1.1
35Me5i2dM1M:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
36Me5i2dM2M:7-49,M:173-228RNA_pol_L305 → 305.1 → 305.1.1
37Me5i2dM3M:253-310RNA_pol_A_CTD102 → 102.1 → 102.1.1
38Ne5i2dN1N:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
39Ne5i2dN2N:663-700,N:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
40Ne5i2dN4N:592-662325.1.7.0325 → 325.1 → 325.1.7
41Ne5i2dN5N:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
42Ne5i2dN6N:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
43Ne5i2dN7N:1-141,N:331-457RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
44Ne5i2dN8N:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
45Oe5i2dO1O:1110-1200275.1.1.0275 → 275.1 → 275.1.1
46Oe5i2dO2O:166-216,O:364-394325.1.7.0325 → 325.1 → 325.1.7
47Oe5i2dO3O:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
48Oe5i2dO4O:611-653,O:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
49Oe5i2dO5O:1201-1269,O:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
50Oe5i2dO6O:395-448325.1.7.0325 → 325.1 → 325.1.7
51Oe5i2dO7O:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
52Oe5i2dO8O:1270-1330325.1.7.0325 → 325.1 → 325.1.7
53Oe5i2dO9O:3-165,O:449-610RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
54Oe5i2dO10O:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
55Pe5i2dP1P:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
56Qe5i2dQ1Q:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
57Qe5i2dQ2Q:318-423Sigma70_r4101 → 101.1 → 101.1.1
58Qe5i2dQ3Q:258-317Sigma70_r3101 → 101.1 → 101.1.1
59Re5i2dR1R:1-109cNMP_binding10 → 10.12 → 10.12.1
60Re5i2dR2R:110-195HTH_Crp_2101 → 101.1 → 101.1.2
61Se5i2dS1S:110-195HTH_Crp_2101 → 101.1 → 101.1.2
62Se5i2dS2S:1-109cNMP_binding10 → 10.12 → 10.12.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors