PDB 5IY7
ELECTRON MICROSCOPY0 chains56 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 0view chain
1 domainChain 1view chain
1 domainChain 2view chain
1 domainChain 3view chain
1 domainChain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
3 domainsChain Nview chain
2 domainsChain Oview chain
2 domainsChain Pview chain
2 domainsChain Qview chain
2 domainsChain Rview chain
3 domainsChain Sview chain
1 domainChain Tview chain
2 domainsChain Uview chain
2 domainsChain Vview chain
2 domainsChain Wview chain
1 domainAll Domains (56)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e5iy701 | 0:54-241 | Ssl1 | 2006 → 2006.1 → 2006.1.6 |
| 2 | 1 | e5iy711 | 1:1-62 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 3 | 2 | e5iy721 | 2:388-459 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 4 | 3 | e5iy731 | 3:5-72,3:100-231 | Tfb4 | 2006 → 2006.1 → 2006.1.6 |
| 5 | A | e5iy7A1 | A:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 6 | A | e5iy7A2 | A:389-449 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 7 | A | e5iy7A3 | A:1083-1135,A:1361-1485 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 8 | A | e5iy7A4 | A:1165-1297 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 9 | A | e5iy7A5 | A:1136-1164,A:1298-1360 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 10 | A | e5iy7A6 | A:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 11 | A | e5iy7A7 | A:351-388,A:450-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 12 | A | e5iy7A8 | A:10-157,A:180-350 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 13 | A | e5iy7A9 | A:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 14 | B | e5iy7B1 | B:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | B | e5iy7B2 | B:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 16 | B | e5iy7B3 | B:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 17 | B | e5iy7B4 | B:10-67,B:87-200,B:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 18 | B | e5iy7B5 | B:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 19 | B | e5iy7B6 | B:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 20 | B | e5iy7B7 | B:769-805,B:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 21 | C | e5iy7C1 | C:1-42,C:179-275 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 22 | C | e5iy7C2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 23 | D | e5iy7D1 | D:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 24 | E | e5iy7E1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 25 | E | e5iy7E2 | E:1-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 26 | F | e5iy7F1 | F:42-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 27 | G | e5iy7G1 | G:78-171 | S1 | 2 → 2.1 → 2.1.1 |
| 28 | G | e5iy7G2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 29 | H | e5iy7H1 | H:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 30 | I | e5iy7I1 | I:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 31 | I | e5iy7I2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 32 | J | e5iy7J1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 33 | K | e5iy7K1 | K:1-117 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 34 | L | e5iy7L1 | L:13-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 35 | M | e5iy7M1 | M:7-67 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 36 | M | e5iy7M2 | M:68-208 | TFIIB | 101 → 101.1 → 101.1.10 |
| 37 | M | e5iy7M3 | M:209-316 | TFIIB | 101 → 101.1 → 101.1.10 |
| 38 | N | e5iy7N1 | N:322-376 | TFIIA | 74 → 74.1 → 74.1.1 |
| 39 | N | e5iy7N2 | N:9-51,N:308-321 | TFIIA | 104 → 104.1 → 104.1.1 |
| 40 | O | e5iy7O1 | O:1-53 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 41 | O | e5iy7O2 | O:54-99 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 42 | P | e5iy7P1 | P:153-255 | TBP | 331 → 331.1 → 331.1.1 |
| 43 | P | e5iy7P2 | P:256-337 | TBP | 331 → 331.1 → 331.1.1 |
| 44 | Q | e5iy7Q1 | Q:104-204 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 45 | Q | e5iy7Q2 | Q:11-103 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 46 | R | e5iy7R1 | R:75-146 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 47 | R | e5iy7R2 | R:147-206 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 48 | R | e5iy7R3 | R:208-239 | 101.1.2.0 | 101 → 101.1 → 101.1.2 |
| 49 | S | e5iy7S1 | S:5-54,S:93-180 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 50 | T | e5iy7T1 | T:2-119 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 51 | T | e5iy7T2 | T:175-238 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 52 | U | e5iy7U1 | U:242-301 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 53 | U | e5iy7U2 | U:132-239 | TFIIS_M | 103 → 103.4 → 103.4.1 |
| 54 | V | e5iy7V1 | V:244-492 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 55 | V | e5iy7V2 | V:493-718 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 56 | W | e5iy7W1 | W:11-243 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors