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PDB 5IYB

ELECTRON MICROSCOPY0 chains49 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (49)

#ChainDomain IDRangeFamilyClassification
1Ae5iybA1A:10-157,A:180-350RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
2Ae5iybA2A:1083-1135,A:1361-1485RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
3Ae5iybA3A:1165-1297RNA_pol_Rpb1_74955 → 4955.1 → 4955.1.1
4Ae5iybA4A:1136-1164,A:1298-1360RNA_pol_Rpb1_54956 → 4956.1 → 4956.1.1
5Ae5iybA5A:351-388,A:450-533RNA_pol_Rpb1_21 → 1.1 → 1.1.2
6Ae5iybA6A:389-449RNA_pol_Rpb1_2275 → 275.1 → 275.1.1
7Ae5iybA7A:534-685RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
8Ae5iybA8A:895-1082RNA_pol_Rpb1_64957 → 4957.1 → 4957.1.1
9Ae5iybA9A:686-894RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
10Be5iybB1B:806-929RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
11Be5iybB2B:769-805,B:930-1053RNA_pol_Rpb2_61 → 1.1 → 1.1.2
12Be5iybB3B:619-7684042.1.1.04042 → 4042.1 → 4042.1.1
13Be5iybB4B:201-391RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
14Be5iybB5B:529-618RNA_pol_Rpb2_44961 → 4961.1 → 4961.1.1
15Be5iybB6B:10-67,B:87-200,B:392-528RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
16Be5iybB7B:1054-1174RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
17Ce5iybC1C:43-178RNA_pol_A_bac240 → 240.2 → 240.2.1
18Ce5iybC2C:1-42,C:179-275RNA_pol_L305 → 305.1 → 305.1.1
19De5iybD1D:14-142RNA_pol_Rpb4102 → 102.1 → 102.1.1
20Ee5iybE1E:1-138RNA_pol_Rpb5_N2008 → 2008.3 → 2008.3.1
21Ee5iybE2E:139-210RNA_pol_Rpb5_C840 → 840.1 → 840.1.1
22Fe5iybF1F:42-127RNA_pol_Rpb6152 → 152.1 → 152.1.1
23Ge5iybG1G:1-77SHS2_Rpb7-N872 → 872.1 → 872.1.1
24Ge5iybG2G:78-171S12 → 2.1 → 2.1.1
25He5iybH1H:1-150RNA_pol_Rpb82 → 2.1 → 2.1.1
26Ie5iybI1I:60-125TFIIS_C375 → 375.1 → 375.1.1
27Ie5iybI2I:1-59RNA_POL_M_15KD375 → 375.1 → 375.1.1
28Je5iybJ1J:1-67RNA_pol_N101 → 101.4 → 101.4.1
29Ke5iybK1K:1-117RNA_pol_L_2305 → 305.1 → 305.1.1
30Le5iybL1L:13-58DNA_RNApol_7kD375 → 375.1 → 375.1.1
31Me5iybM1M:7-67TF_Zn_Ribbon375 → 375.1 → 375.1.1
32Me5iybM2M:209-316TFIIB101 → 101.1 → 101.1.10
33Me5iybM3M:68-208TFIIB101 → 101.1 → 101.1.10
34Ne5iybN1N:322-376TFIIA74 → 74.1 → 74.1.1
35Ne5iybN2N:9-51,N:308-321TFIIA104 → 104.1 → 104.1.1
36Oe5iybO1O:54-99TFIIA_gamma_C74 → 74.1 → 74.1.1
37Oe5iybO2O:1-53TFIIA_gamma_N104 → 104.1 → 104.1.1
38Pe5iybP1P:153-255TBP331 → 331.1 → 331.1.1
39Pe5iybP2P:256-337TBP331 → 331.1 → 331.1.1
40Qe5iybQ1Q:104-204TF_Zn_Ribbon375 → 375.1 → 375.1.1
41Qe5iybQ2Q:11-103TFIIE_alpha101 → 101.1 → 101.1.2
42Re5iybR1R:75-146TFIIE_beta101 → 101.1 → 101.1.2
43Re5iybR2R:147-206TFA2_Winged_2101 → 101.1 → 101.1.2
44Re5iybR3R:208-239101.1.2.0101 → 101.1 → 101.1.2
45Se5iybS1S:5-54,S:93-180TFIIF_alpha59 → 59.1 → 59.1.1
46Te5iybT1T:2-119TFIIF_beta_N59 → 59.1 → 59.1.1
47Te5iybT2T:175-238TFIIF_beta101 → 101.1 → 101.1.2
48Ue5iybU2U:242-301TFIIS_C375 → 375.1 → 375.1.1
49Ue5iybU3U:132-239TFIIS_M103 → 103.4 → 103.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors