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PDB 5J4D

X-RAY DIFFRACTION3.10 Å0 chains116 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (116)

#ChainDomain IDRangeFamilyClassification
1AAe5j4dAA1AA:1-60Ribosomal_L30887 → 887.1 → 887.1.1
2ABe5j4dAB1AB:19-88Ribosomal_S18101 → 101.1 → 101.1.1
3ACe5j4dAC1AC:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
4ADe5j4dAD1AD:2-118Ribosomal_S13102 → 102.2 → 102.2.1
5BAe5j4dBA1BA:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
6BBe5j4dBB1BB:2-84Ribosomal_S19838 → 838.1 → 838.1.1
7BCe5j4dBC1BC:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
8BCe5j4dBC2BC:93-189Ribosomal_TL5_C240 → 240.1 → 240.1.1
9BDe5j4dBD1BD:2-61Ribosomal_S14377 → 377.1 → 377.1.1
10CAe5j4dCA1CA:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
11CBe5j4dCB1CB:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
12CCe5j4dCC1CC:2-85Ribosomal_L27325 → 325.1 → 325.1.8
13CDe5j4dCD1CD:2-89Ribosomal_S15616 → 616.1 → 616.1.1
14DAe5j4dDA1DA:2-54Ribosomal_L33375 → 375.1 → 375.1.1
15DCe5j4dDC1DC:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
16DDe5j4dDD1DD:1-83Ribosomal_S16837 → 837.1 → 837.1.1
17Ee5j4dE1E:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
18Ee5j4dE2E:2-126Ribosomal_L22 → 2.1 → 2.1.1
19EAe5j4dEA1EA:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
20ECe5j4dEC1EC:1-70Ribosomal_L29192 → 192.4 → 192.4.1
21EDe5j4dED1ED:2-100Ribosomal_S172 → 2.1 → 2.1.1
22Fe5j4dF1F:1-204Ribosomal_L31 → 1.1 → 1.1.7
23FAe5j4dFA1FA:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
24FCe5j4dFC1FC:1-60Ribosomal_L30887 → 887.1 → 887.1.1
25FDe5j4dFD1FD:19-88Ribosomal_S18101 → 101.1 → 101.1.1
26Ge5j4dG1G:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
27GAe5j4dGA1GA:1-37Ribosomal_L36919 → 919.1 → 919.1.1
28GCe5j4dGC1GC:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
29GDe5j4dGD1GD:2-84Ribosomal_S19838 → 838.1 → 838.1.1
30He5j4dH1H:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
31HCe5j4dHC1HC:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
32HDe5j4dHD1HD:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
33Ie5j4dI1I:83-175Ribosomal_L6318 → 318.1 → 318.1.1
34Ie5j4dI2I:2-82Ribosomal_L6318 → 318.1 → 318.1.1
35ICe5j4dIC1IC:2-54Ribosomal_L33375 → 375.1 → 375.1.1
36Je5j4dJ1J:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
37Je5j4dJ2J:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
38JAe5j4dJA1JA:101-210PCRF304 → 304.116 → 304.116.1
39JAe5j4dJA2JA:211-290RF-1330 → 330.3 → 330.3.1
40JAe5j4dJA3JA:291-358330.3.1.0330 → 330.3 → 330.3.1
41JBe5j4dJB1JB:2-126Ribosomal_L22 → 2.1 → 2.1.1
42JBe5j4dJB2JB:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
43JCe5j4dJC1JC:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
44Ke5j4dK1K:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
45KAe5j4dKA1KA:7-240Ribosomal_S22007 → 2007.6 → 2007.6.1
46KBe5j4dKB1KB:1-204Ribosomal_L31 → 1.1 → 1.1.7
47KCe5j4dKC1KC:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
48Le5j4dL1L:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
49LAe5j4dLA1LA:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
50LAe5j4dLA2LA:2-106KH_2327 → 327.11 → 327.11.1
51LBe5j4dLB1LB:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
52LCe5j4dLC1LC:1-37Ribosomal_L36919 → 919.1 → 919.1.1
53Me5j4dM1M:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
54MAe5j4dMA1MA:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
55MBe5j4dMB1MB:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
56Ne5j4dN1N:1-141Ribosomal_L16325 → 325.1 → 325.1.5
57NAe5j4dNA1NA:5-73Ribosomal_S5330 → 330.1 → 330.1.1
58NAe5j4dNA2NA:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
59NBe5j4dNB1NB:83-175Ribosomal_L6318 → 318.1 → 318.1.1
60NBe5j4dNB2NB:2-82Ribosomal_L6318 → 318.1 → 318.1.1
61Oe5j4dO1O:1-118Ribosomal_L17218 → 218.3 → 218.3.1
62OAe5j4dOA1OA:1-101Ribosomal_S6304 → 304.12 → 304.12.1
63OBe5j4dOB1OB:53-146Ribosomal_L9_C523 → 523.1 → 523.1.1
64OBe5j4dOB2OB:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
65OCe5j4dOC1OC:101-210PCRF304 → 304.116 → 304.116.1
66OCe5j4dOC2OC:211-290RF-1330 → 330.3 → 330.3.1
67OCe5j4dOC3OC:291-358330.3.1.0330 → 330.3 → 330.3.1
68Pe5j4dP1P:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
69PAe5j4dPA1PA:2-156Ribosomal_S7167 → 167.1 → 167.1.1
70PBe5j4dPB1PB:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
71PCe5j4dPC1PC:7-240Ribosomal_S22007 → 2007.6 → 2007.6.1
72Qe5j4dQ1Q:1-137Ribosomal_L194 → 4.1 → 4.1.1
73QAe5j4dQA1QA:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
74QAe5j4dQA2QA:1-66Ribosomal_S8320 → 320.2 → 320.2.1
75QBe5j4dQB1QB:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
76QCe5j4dQC1QC:2-106KH_2327 → 327.11 → 327.11.1
77QCe5j4dQC2QC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
78Re5j4dR1R:2-118Ribosomal_L20143 → 143.2 → 143.2.1
79RAe5j4dRA1RA:2-128Ribosomal_S9212 → 212.1 → 212.1.1
80RBe5j4dRB1RB:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
81RCe5j4dRC1RC:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
82Se5j4dS1S:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
83SAe5j4dSA1SA:3-100Ribosomal_S10304 → 304.44 → 304.44.1
84SBe5j4dSB1SB:1-141Ribosomal_L16325 → 325.1 → 325.1.5
85SCe5j4dSC1SC:5-73Ribosomal_S5330 → 330.1 → 330.1.1
86SCe5j4dSC2SC:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
87Te5j4dT1T:1-112Ribosomal_L22218 → 218.2 → 218.2.1
88TAe5j4dTA1TA:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
89TBe5j4dTB1TB:1-118Ribosomal_L17218 → 218.3 → 218.3.1
90TCe5j4dTC1TC:1-101Ribosomal_S6304 → 304.12 → 304.12.1
91Ue5j4dU1U:1-95Ribosomal_L23304 → 304.109 → 304.109.1
92UAe5j4dUA1UA:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
93UBe5j4dUB1UB:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
94UCe5j4dUC1UC:2-156Ribosomal_S7167 → 167.1 → 167.1.1
95Ve5j4dV1V:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
96VAe5j4dVA1VA:2-118Ribosomal_S13102 → 102.2 → 102.2.1
97VBe5j4dVB1VB:1-137Ribosomal_L194 → 4.1 → 4.1.1
98VCe5j4dVC1VC:1-66Ribosomal_S8320 → 320.2 → 320.2.1
99VCe5j4dVC2VC:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
100We5j4dW1W:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
101We5j4dW2W:93-189Ribosomal_TL5_C240 → 240.1 → 240.1.1
102WAe5j4dWA1WA:2-61Ribosomal_S14377 → 377.1 → 377.1.1
103WBe5j4dWB1WB:2-118Ribosomal_L20143 → 143.2 → 143.2.1
104WCe5j4dWC1WC:2-128Ribosomal_S9212 → 212.1 → 212.1.1
105Xe5j4dX1X:2-85Ribosomal_L27325 → 325.1 → 325.1.8
106XAe5j4dXA1XA:2-89Ribosomal_S15616 → 616.1 → 616.1.1
107XBe5j4dXB1XB:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
108XCe5j4dXC1XC:3-100Ribosomal_S10304 → 304.44 → 304.44.1
109Ye5j4dY1Y:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
110YAe5j4dYA1YA:1-83Ribosomal_S16837 → 837.1 → 837.1.1
111YBe5j4dYB1YB:1-112Ribosomal_L22218 → 218.2 → 218.2.1
112YCe5j4dYC1YC:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
113Ze5j4dZ1Z:1-70Ribosomal_L29192 → 192.4 → 192.4.1
114ZAe5j4dZA1ZA:2-100Ribosomal_S172 → 2.1 → 2.1.1
115ZBe5j4dZB1ZB:1-95Ribosomal_L23304 → 304.109 → 304.109.1
116ZCe5j4dZC1ZC:5-126Ribosom_S12_S232 → 2.1 → 2.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors