PDB 5M3F
ELECTRON MICROSCOPY0 chains33 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
11 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
1 domainChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
1 domainChain Nview chain
1 domainAll Domains (33)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5m3fA1 | A:1-141,A:174-268,A:312-464 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e5m3fA2 | A:1054-1180 | 4957.2.1.0 | 4957 → 4957.2 → 4957.2.1 |
| 3 | A | e5m3fA3 | A:827-1053 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 4 | A | e5m3fA4 | A:465-515 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 5 | A | e5m3fA5 | A:1333-1337,A:1441-1463 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 6 | A | e5m3fA6 | A:1485-1548 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 7 | A | e5m3fA7 | A:1230-1265 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 8 | A | e5m3fA8 | A:516-665 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 9 | A | e5m3fA9 | A:666-826 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 10 | A | e5m3fA10 | A:1181-1229,A:1549-1662 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 11 | A | e5m3fA11 | A:1266-1332 | 4954.1.1.0 | 4954 → 4954.1 → 4954.1.1 |
| 12 | B | e5m3fB1 | B:647-761 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 13 | B | e5m3fB2 | B:13-209,B:401-547 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 14 | B | e5m3fB3 | B:762-798,B:912-1040 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 15 | B | e5m3fB4 | B:1041-1203 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 16 | B | e5m3fB5 | B:548-646 | RNA_pol_Rpa2_4 | 4961 → 4961.1 → 4961.1.1 |
| 17 | B | e5m3fB6 | B:210-400 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 18 | B | e5m3fB7 | B:799-911 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 19 | C | e5m3fC1 | C:76-221 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 20 | C | e5m3fC2 | C:31-75,C:222-335 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 21 | D | e5m3fD1 | D:12-48,D:80-96 | RNA_polI_A14 | 102 → 102.1 → 102.1.1 |
| 22 | E | e5m3fE1 | E:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 23 | E | e5m3fE2 | E:4-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 24 | F | e5m3fF1 | F:55-154 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 25 | G | e5m3fG1 | G:14-126 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 26 | G | e5m3fG2 | G:127-170,G:216-250 | RPA43_OB | 2 → 2.1 → 2.1.1 |
| 27 | H | e5m3fH1 | H:3-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 28 | I | e5m3fI1 | I:2-64 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 29 | J | e5m3fJ1 | J:1-69 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 30 | K | e5m3fK1 | K:42-142 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 31 | L | e5m3fL1 | L:27-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 32 | M | e5m3fM1 | M:8-115 | RNA_pol_I_A49 | 59 → 59.1 → 59.1.3 |
| 33 | N | e5m3fN1 | N:24-180 | RNA_polI_A34 | 59 → 59.1 → 59.1.3 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors