PDB 5M5W
ELECTRON MICROSCOPY0 chains32 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
1 domainChain Nview chain
1 domainAll Domains (32)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5m5wA1 | A:464-505,A:581-665 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 2 | A | e5m5wA2 | A:1262-1352,A:1438-1497 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 3 | A | e5m5wA3 | A:1054-1180 | 4957.2.1.0 | 4957 → 4957.2 → 4957.2.1 |
| 4 | A | e5m5wA4 | A:1235-1261,A:1498-1544 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 5 | A | e5m5wA5 | A:666-826 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 6 | A | e5m5wA6 | A:1-141,A:172-270,A:312-463 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 7 | A | e5m5wA7 | A:1181-1234,A:1545-1663 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 8 | A | e5m5wA8 | A:506-580 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 9 | A | e5m5wA9 | A:827-1053 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 10 | B | e5m5wB1 | B:548-646 | RNA_pol_Rpa2_4 | 4961 → 4961.1 → 4961.1.1 |
| 11 | B | e5m5wB2 | B:799-911 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 12 | B | e5m5wB3 | B:11-209,B:401-547 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 13 | B | e5m5wB4 | B:210-400 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 14 | B | e5m5wB5 | B:647-761 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 15 | B | e5m5wB6 | B:1041-1203 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 16 | B | e5m5wB7 | B:762-798,B:912-1040 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 17 | C | e5m5wC1 | C:76-221 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 18 | C | e5m5wC2 | C:30-75,C:222-335 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 19 | D | e5m5wD1 | D:12-49,D:80-100 | RNA_polI_A14 | 102 → 102.1 → 102.1.1 |
| 20 | E | e5m5wE1 | E:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 21 | E | e5m5wE2 | E:2-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 22 | F | e5m5wF1 | F:55-154 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 23 | G | e5m5wG1 | G:127-174,G:215-251 | RPA43_OB | 2 → 2.1 → 2.1.1 |
| 24 | G | e5m5wG2 | G:8-126 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 25 | H | e5m5wH1 | H:3-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 26 | I | e5m5wI1 | I:2-67 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 27 | I | e5m5wI2 | I:68-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 28 | J | e5m5wJ1 | J:1-69 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | K | e5m5wK1 | K:43-142 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 30 | L | e5m5wL1 | L:28-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 31 | M | e5m5wM1 | M:8-114 | RNA_pol_I_A49 | 59 → 59.1 → 59.1.3 |
| 32 | N | e5m5wN1 | N:22-180 | RNA_polI_A34 | 59 → 59.1 → 59.1.3 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors