PDB 5MDY
ELECTRON MICROSCOPY0 chains62 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
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1 domainChain bview chain
1 domainChain Bview chain
2 domainsChain cview chain
1 domainChain Cview chain
1 domainChain dview chain
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1 domainChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
1 domainChain Fview chain
2 domainsChain gview chain
1 domainChain Gview chain
2 domainsChain hview chain
2 domainsChain Hview chain
1 domainChain iview chain
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2 domainsChain jview chain
2 domainsChain Jview chain
1 domainChain kview chain
1 domainChain Kview chain
1 domainChain lview chain
1 domainChain Lview chain
1 domainChain mview chain
2 domainsChain Mview chain
1 domainChain nview chain
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1 domainChain pview chain
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1 domainChain qview chain
1 domainChain Qview chain
1 domainChain rview chain
1 domainChain Rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
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1 domainChain uview chain
1 domainChain Uview chain
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1 domainChain Vview chain
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1 domainChain yview chain
1 domainChain Yview chain
1 domainChain zview chain
1 domainChain Zview chain
1 domainAll Domains (62)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 7 | e5mdy71 | 7:227-315 | RF-1 | 330 → 330.3 → 330.3.1 |
| 2 | 7 | e5mdy72 | 7:316-369 | 330.3.1.0 | 330 → 330.3 → 330.3.1 |
| 3 | 7 | e5mdy73 | 7:17-121 | PCRF | 4006 → 4006.1 → 4006.1.1 |
| 4 | 7 | e5mdy74 | 7:122-226 | PCRF | 304 → 304.116 → 304.116.1 |
| 5 | a | e5mdya1 | a:1-63 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 6 | b | e5mdyb1 | b:2-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 7 | B | e5mdyB1 | B:2-125 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 8 | B | e5mdyB2 | B:126-272 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 9 | c | e5mdyc1 | c:4-55 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 10 | C | e5mdyC1 | C:1-209 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 11 | d | e5mdyd1 | d:1-46 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 12 | D | e5mdyD1 | D:1-201 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 13 | e | e5mdye1 | e:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 14 | E | e5mdyE1 | E:2-178 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 15 | f | e5mdyf1 | f:1-38 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 16 | F | e5mdyF1 | F:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 17 | F | e5mdyF2 | F:83-176 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 18 | g | e5mdyg1 | g:3-227 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 19 | G | e5mdyG2 | G:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 20 | G | e5mdyG1 | G:56-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 21 | h | e5mdyh1 | h:106-209 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 22 | h | e5mdyh2 | h:2-105 | KH_2 | 327 → 327.11 → 327.11.1 |
| 23 | H | e5mdyH1 | H:2-131 | Ribosomal_L10 | 304 → 304.60 → 304.60.1 |
| 24 | i | e5mdyi1 | i:2-206 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 25 | I | e5mdyI1 | I:5-71 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 26 | I | e5mdyI2 | I:72-139 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 27 | j | e5mdyj1 | j:10-78 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 28 | j | e5mdyj2 | j:79-165 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 29 | J | e5mdyJ1 | J:1-142 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 30 | k | e5mdyk1 | k:1-104 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 31 | K | e5mdyK1 | K:1-123 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 32 | l | e5mdyl1 | l:2-152 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 33 | L | e5mdyL1 | L:1-144 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 34 | m | e5mdym1 | m:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 35 | m | e5mdym2 | m:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 36 | M | e5mdyM1 | M:1-136 | 325.1.5.0 | 325 → 325.1 → 325.1.5 |
| 37 | n | e5mdyn1 | n:4-130 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 38 | N | e5mdyN1 | N:1-119 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 39 | o | e5mdyo1 | o:5-103 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 40 | O | e5mdyO1 | O:2-117 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 41 | p | e5mdyp1 | p:13-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 42 | P | e5mdyP1 | P:2-115 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 43 | q | e5mdyq1 | q:2-124 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 44 | Q | e5mdyQ1 | Q:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 45 | r | e5mdyr1 | r:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 46 | R | e5mdyR1 | R:1-103 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 47 | s | e5mdys1 | s:2-101 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 48 | S | e5mdyS1 | S:1-110 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 49 | t | e5mdyt1 | t:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 50 | T | e5mdyT1 | T:1-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 51 | u | e5mdyu1 | u:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 52 | U | e5mdyU1 | U:2-104 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 53 | v | e5mdyv1 | v:4-83 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 54 | V | e5mdyV1 | V:1-94 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 55 | w | e5mdyw1 | w:10-75 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 56 | W | e5mdyW1 | W:10-85 | 325.1.8.0 | 325 → 325.1 → 325.1.8 |
| 57 | x | e5mdyx1 | x:2-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 58 | X | e5mdyX1 | X:2-78 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 59 | y | e5mdyy1 | y:2-87 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 60 | Y | e5mdyY1 | Y:2-63 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 61 | z | e5mdyz1 | z:2-71 | Ribosomal_S21 | 3666 → 3666.1 → 3666.1.1 |
| 62 | Z | e5mdyZ1 | Z:2-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors