PDB 5MS0
ELECTRON MICROSCOPY0 chains33 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
10 domainsChain Dview chain
9 domainsChain Eview chain
1 domainChain Fview chain
2 domainsChain Lview chain
1 domainChain Mview chain
5 domainsChain Oview chain
1 domainAll Domains (33)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5ms0A1 | A:1-52,A:179-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e5ms0A2 | A:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e5ms0B1 | B:1-52,B:179-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e5ms0B2 | B:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e5ms0C1 | C:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 6 | C | e5ms0C2 | C:227-234,C:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 7 | C | e5ms0C3 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 8 | C | e5ms0C4 | C:8-152,C:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 9 | C | e5ms0C5 | C:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 10 | C | e5ms0C6 | C:153-226,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 11 | C | e5ms0C7 | C:791-828,C:1100-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | C | e5ms0C8 | C:828-938 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 13 | C | e5ms0C9 | C:939-1057 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 14 | C | e5ms0C10 | C:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 15 | D | e5ms0D1 | D:1152-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 16 | D | e5ms0D2 | D:895-931,D:1214-1389 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 17 | D | e5ms0D3 | D:14-341 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 18 | D | e5ms0D4 | D:932-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | D | e5ms0D5 | D:1023-1151 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | D | e5ms0D6 | D:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 21 | D | e5ms0D7 | D:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 22 | D | e5ms0D8 | D:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 23 | D | e5ms0D9 | D:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 24 | E | e5ms0E1 | E:4-103 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 25 | F | e5ms0F1 | F:123-181 | KOW | 4 → 4.1 → 4.1.1 |
| 26 | F | e5ms0F2 | F:1-46,F:67-123 | NusG | 304 → 304.17 → 304.17.1 |
| 27 | L | e5ms0L1 | L:1-139 | NusB | 195 → 195.1 → 195.1.1 |
| 28 | M | e5ms0M1 | M:1-125 | NusA_N | 885 → 885.1 → 885.1.1 |
| 29 | M | e5ms0M2 | M:200-278 | KH_5 | 327 → 327.11 → 327.11.1 |
| 30 | M | e5ms0M3 | M:126-199 | S1 | 2 → 2.1 → 2.1.1 |
| 31 | M | e5ms0M4 | M:279-348 | KH_NusA_2nd | 327 → 327.11 → 327.11.1 |
| 32 | M | e5ms0M5 | M:349-485 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 33 | O | e5ms0O1 | O:2-90 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors