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PDB 5NDK

X-RAY DIFFRACTION2.95 Å0 chains106 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (106)

#ChainDomain IDRangeFamilyClassification
111e5ndk11111:127-274Ribosomal_L2_C4 → 4.1 → 4.1.1
211e5ndk11211:2-126Ribosomal_L22 → 2.1 → 2.1.1
312e5ndk12112:4-240Ribosomal_S22007 → 2007.6 → 2007.6.1
415e5ndk15115:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
519e5ndk19119:2-126Ribosomal_L22 → 2.1 → 2.1.1
619e5ndk19219:127-274Ribosomal_L2_C4 → 4.1 → 4.1.1
71Ae5ndk1A11A:3-101Ribosomal_S10304 → 304.44 → 304.44.1
81Ee5ndk1E11E:4-240Ribosomal_S22007 → 2007.6 → 2007.6.1
91Ie5ndk1I11I:3-101Ribosomal_S10304 → 304.44 → 304.44.1
1021e5ndk21121:1-205Ribosomal_L31 → 1.1 → 1.1.7
1122e5ndk22122:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
1222e5ndk22222:2-106KH_2327 → 327.11 → 327.11.1
1325e5ndk25125:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
1429e5ndk29129:1-205Ribosomal_L31 → 1.1 → 1.1.7
152Ae5ndk2A12A:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
162Ee5ndk2E12E:2-105KH_2327 → 327.11 → 327.11.1
172Ee5ndk2E22E:106-206Ribosomal_S3_C230 → 230.2 → 230.2.1
182Ie5ndk2I12I:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
1931e5ndk31131:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
2032e5ndk32132:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
2135e5ndk35135:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
2239e5ndk39139:1-208Ribosomal_L47559 → 7559.1 → 7559.1.1
233Ae5ndk3A13A:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
243Ee5ndk3E13E:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
253Ie5ndk3I13I:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
2641e5ndk41141:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
2742e5ndk42142:5-73Ribosomal_S5330 → 330.1 → 330.1.1
2842e5ndk42242:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
2945e5ndk45145:2-141Ribosomal_L16325 → 325.1 → 325.1.5
3049e5ndk49149:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
314Ae5ndk4A14A:2-117Ribosomal_S13102 → 102.2 → 102.2.1
324Ee5ndk4E14E:5-73Ribosomal_S5330 → 330.1 → 330.1.1
334Ee5ndk4E24E:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
344Ie5ndk4I14I:2-117Ribosomal_S13102 → 102.2 → 102.2.1
3551e5ndk51151:83-175Ribosomal_L6318 → 318.1 → 318.1.1
3651e5ndk51251:2-82Ribosomal_L6318 → 318.1 → 318.1.1
3752e5ndk52152:1-101Ribosomal_S6304 → 304.12 → 304.12.1
3855e5ndk55155:2-118Ribosomal_L17218 → 218.3 → 218.3.1
3958e5ndk58158:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
4059e5ndk59159:2-82Ribosomal_L6318 → 318.1 → 318.1.1
4159e5ndk59259:83-171Ribosomal_L6318 → 318.1 → 318.1.1
425Ae5ndk5A15A:4-61Ribosomal_S14377 → 377.1 → 377.1.1
435Ee5ndk5E15E:1-101Ribosomal_S6304 → 304.12 → 304.12.1
445Ie5ndk5I15I:2-61Ribosomal_S14377 → 377.1 → 377.1.1
4561e5ndk61161:56-146Ribosomal_L9_C523 → 523.1 → 523.1.1
4661e5ndk61261:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
4762e5ndk62162:2-156Ribosomal_S7167 → 167.1 → 167.1.1
4865e5ndk65165:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
4968e5ndk68168:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
5069e5ndk69169:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
5169e5ndk69269:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
526Ae5ndk6A16A:2-89Ribosomal_S15616 → 616.1 → 616.1.1
536Ee5ndk6E16E:2-153Ribosomal_S7167 → 167.1 → 167.1.1
546Ie5ndk6I16I:2-89Ribosomal_S15616 → 616.1 → 616.1.1
5572e5ndk72172:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
5672e5ndk72272:1-66Ribosomal_S8320 → 320.2 → 320.2.1
5775e5ndk75175:1-137Ribosomal_L194 → 4.1 → 4.1.1
5878e5ndk78178:1-147Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
597Ae5ndk7A17A:1-84Ribosomal_S16837 → 837.1 → 837.1.1
607Ee5ndk7E17E:1-66Ribosomal_S8320 → 320.2 → 320.2.1
617Ee5ndk7E27E:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
627Ie5ndk7I17I:1-84Ribosomal_S16837 → 837.1 → 837.1.1
6382e5ndk82182:2-125Ribosomal_S9212 → 212.1 → 212.1.1
6485e5ndk85185:2-118Ribosomal_L20143 → 143.2 → 143.2.1
6588e5ndk88188:1-141Ribosomal_L16325 → 325.1 → 325.1.5
668Ae5ndk8A18A:2-100Ribosomal_S172 → 2.1 → 2.1.1
678Ee5ndk8E18E:2-128Ribosomal_S9212 → 212.1 → 212.1.1
688Ie5ndk8I18I:2-101Ribosomal_S172 → 2.1 → 2.1.1
6995e5ndk95195:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
7098e5ndk98198:1-118Ribosomal_L17218 → 218.3 → 218.3.1
719Ae5ndk9A19A:20-88Ribosomal_S18101 → 101.1 → 101.1.1
729Ie5ndk9I19I:21-87Ribosomal_S18101 → 101.1 → 101.1.1
73A5e5ndkA51A5:1-113Ribosomal_L22218 → 218.2 → 218.2.1
74A8e5ndkA81A8:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
75AAe5ndkAA1AA:7-84Ribosomal_S19838 → 838.1 → 838.1.1
76AIe5ndkAI1AI:4-83Ribosomal_S19838 → 838.1 → 838.1.1
77B5e5ndkB51B5:3-94Ribosomal_L23304 → 304.109 → 304.109.1
78B8e5ndkB81B8:1-129Ribosomal_L194 → 4.1 → 4.1.1
79BAe5ndkBA1BA:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
80BIe5ndkBI1BI:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
81C5e5ndkC51C5:2-105KOW,ribosomal_L244 → 4.1 → 4.1.1
82C8e5ndkC81C8:2-118Ribosomal_L20143 → 143.2 → 143.2.1
83D5e5ndkD51D5:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
84D5e5ndkD52D5:93-169Ribosomal_TL5_C240 → 240.1 → 240.1.1
85D8e5ndkD81D8:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
86E5e5ndkE51E5:2-85325.1.8.0325 → 325.1 → 325.1.8
87E8e5ndkE81E8:1-112Ribosomal_L22218 → 218.2 → 218.2.1
88F5e5ndkF51F5:2-95Ribosomal_L284232 → 4232.1 → 4232.1.1
89F8e5ndkF81F8:1-94Ribosomal_L23304 → 304.109 → 304.109.1
90G5e5ndkG51G5:4-70Ribosomal_L29192 → 192.4 → 192.4.1
91G8e5ndkG81G8:3-105KOW,ribosomal_L244 → 4.1 → 4.1.1
92H5e5ndkH51H5:2-60Ribosomal_L30887 → 887.1 → 887.1.1
93H8e5ndkH81H8:94-171Ribosomal_TL5_C240 → 240.1 → 240.1.1
94H8e5ndkH82H8:1-93Ribosomal_L25p239 → 239.1 → 239.1.1
95I5e5ndkI51I5:1-63Ribosomal_L314987 → 4987.1 → 4987.1.1
96I8e5ndkI81I8:2-84325.1.8.0325 → 325.1 → 325.1.8
97J5e5ndkJ51J5:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
98J8e5ndkJ81J8:2-96Ribosomal_L284232 → 4232.1 → 4232.1.1
99K8e5ndkK81K8:2-69Ribosomal_L29192 → 192.4 → 192.4.1
100L5e5ndkL51L5:1-47Ribosomal_L343074 → 3074.1 → 3074.1.1
101L8e5ndkL81L8:2-58Ribosomal_L30887 → 887.1 → 887.1.1
102M5e5ndkM51M5:2-63Ribosomal_L35p4281 → 4281.1 → 4281.1.1
103M8e5ndkM81M8:1-66Ribosomal_L314987 → 4987.1 → 4987.1.1
104N8e5ndkN81N8:3-57Ribosomal_L32p375 → 375.1 → 375.1.1
105P8e5ndkP81P8:1-47Ribosomal_L343074 → 3074.1 → 3074.1.1
106Q8e5ndkQ81Q8:2-61Ribosomal_L35p4281 → 4281.1 → 4281.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors