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PDB 5NDV

X-RAY DIFFRACTION3.30 Å0 chains176 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (176)

#ChainDomain IDRangeFamilyClassification
1c0e5ndvc01c0:1-98S10_plectin101 → 101.1 → 101.1.2
2C0e5ndvC01C0:1-90S10_plectin101 → 101.1 → 101.1.2
3c1e5ndvc11c1:2-147Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
4C1e5ndvC11C1:5-143Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
5c2e5ndvc21c2:20-143Ribosomal_L7Ae301 → 301.1 → 301.1.1
6C2e5ndvC21C2:26-140Ribosomal_L7Ae301 → 301.1 → 301.1.1
7c3e5ndvc31c3:83-151Ribosomal_S15616 → 616.1 → 616.1.1
8c3e5ndvc32c3:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
9C3e5ndvC31C3:83-151Ribosomal_S15616 → 616.1 → 616.1.1
10C3e5ndvC32C3:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
11c4e5ndvc41c4:10-137Ribosomal_S112484 → 2484.1 → 2484.1.1
12C4e5ndvC41C4:11-137Ribosomal_S112484 → 2484.1 → 2484.1.1
13c5e5ndvc51c5:4-138Ribosomal_S19838 → 838.1 → 838.1.1
14C5e5ndvC51C5:16-131Ribosomal_S19838 → 838.1 → 838.1.1
15c6e5ndvc61c6:2-143Ribosomal_S9212 → 212.1 → 212.1.1
16C6e5ndvC61C6:5-140Ribosomal_S9212 → 212.1 → 212.1.1
17c7e5ndvc71c7:2-122Ribosomal_S17e101 → 101.1 → 101.1.17
18C7e5ndvC71C7:2-121Ribosomal_S17e101 → 101.1 → 101.1.17
19c8e5ndvc81c8:2-66,c8:90-146Ribosomal_S13102 → 102.2 → 102.2.1
20C8e5ndvC81C8:4-146Ribosomal_S13102 → 102.2 → 102.2.1
21c9e5ndvc91c9:2-144Ribosomal_S19e101 → 101.1 → 101.1.2
22C9e5ndvC91C9:7-143Ribosomal_S19e101 → 101.1 → 101.1.2
23d0e5ndvd01d0:13-121Ribosomal_S10304 → 304.44 → 304.44.1
24D0e5ndvD01D0:17-118Ribosomal_S10304 → 304.44 → 304.44.1
25d1e5ndvd11d1:1-87Ribosomal_S21e3167 → 3167.1 → 3167.1.1
26D1e5ndvD11D1:1-87Ribosomal_S21e3167 → 3167.1 → 3167.1.1
27d2e5ndvd21d2:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
28d2e5ndvd22d2:2-67Ribosomal_S8320 → 320.2 → 320.2.1
29D2e5ndvD21D2:2-67Ribosomal_S8320 → 320.2 → 320.2.1
30D2e5ndvD22D2:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
31d3e5ndvd31d3:2-145Ribosom_S12_S232 → 2.1 → 2.1.1
32D3e5ndvD31D3:2-145Ribosom_S12_S232 → 2.1 → 2.1.1
33d4e5ndvd41d4:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
34D4e5ndvD41D4:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
35d5e5ndvd51d5:37-105Ribosomal_S25101 → 101.1 → 101.1.2
36D5e5ndvD51D5:36-105Ribosomal_S25101 → 101.1 → 101.1.2
37d6e5ndvd61d6:2-98Ribosomal_S26e377 → 377.1 → 377.1.1
38D6e5ndvD61D6:2-98Ribosomal_S26e377 → 377.1 → 377.1.1
39d7e5ndvd71d7:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
40D7e5ndvD71D7:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
41d8e5ndvd81d8:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
42D8e5ndvD81D8:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
43d9e5ndvd91d9:4-56Ribosomal_S14377 → 377.1 → 377.1.1
44D9e5ndvD91D9:4-56Ribosomal_S14377 → 377.1 → 377.1.1
45e0e5ndve01e0:2-63Ribosomal_S303168 → 3168.1 → 3168.1.1
46E0e5ndvE01E0:2-61Ribosomal_S303168 → 3168.1 → 3168.1.1
47l2e5ndvl21l2:99-249Ribosomal_L2_C4 → 4.1 → 4.1.1
48l2e5ndvl22l2:2-98Ribosomal_L22 → 2.1 → 2.1.1
49L2e5ndvL21L2:2-98Ribosomal_L22 → 2.1 → 2.1.1
50L2e5ndvL22L2:99-249Ribosomal_L2_C4 → 4.1 → 4.1.1
51l3e5ndvl31l3:2-387Ribosomal_L31 → 1.1 → 1.1.7
52L3e5ndvL31L3:2-387Ribosomal_L31 → 1.1 → 1.1.7
53l4e5ndvl42l4:270-362Ribos_L4_asso_C3319 → 3319.1 → 3319.1.1
54l4e5ndvl43l4:2-275Ribosomal_L47559 → 7559.1 → 7559.1.1
55L4e5ndvL42L4:270-362Ribos_L4_asso_C3319 → 3319.1 → 3319.1.1
56L4e5ndvL43L4:2-275Ribosomal_L47559 → 7559.1 → 7559.1.1
57l5e5ndvl51l5:4-297Ribosomal_L18_c,Ribosomal_L5e2484 → 2484.1 → 2484.1.1
58L5e5ndvL51L5:2-294Ribosomal_L18_c,Ribosomal_L5e2484 → 2484.1 → 2484.1.1
59l6e5ndvl61l6:2-176Ribosomal_L6e4 → 4.1 → 4.1.1
60L6e5ndvL61L6:2-109,L6:129-176Ribosomal_L6e4 → 4.1 → 4.1.1
61l7e5ndvl71l7:22-244Ribosomal_L30,Ribosomal_L30_N887 → 887.1 → 887.1.1
62L7e5ndvL71L7:19-244Ribosomal_L30,Ribosomal_L30_N887 → 887.1 → 887.1.1
63l8e5ndvl81l8:24-254Ribosomal_L7Ae301 → 301.1 → 301.1.1
64L8e5ndvL81L8:24-254Ribosomal_L7Ae301 → 301.1 → 301.1.1
65l9e5ndvl91l9:86-191Ribosomal_L6318 → 318.1 → 318.1.1
66l9e5ndvl92l9:1-85Ribosomal_L6318 → 318.1 → 318.1.1
67L9e5ndvL91L9:1-85Ribosomal_L6318 → 318.1 → 318.1.1
68L9e5ndvL92L9:86-189Ribosomal_L6318 → 318.1 → 318.1.1
69m0e5ndvm01m0:2-220Ribosomal_L16325 → 325.1 → 325.1.5
70M0e5ndvM01M0:2-218Ribosomal_L16325 → 325.1 → 325.1.5
71m1e5ndvm11m1:6-174Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
72M1e5ndvM11M1:6-174Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
73m3e5ndvm31m3:2-195Ribosomal_L13e3210 → 3210.1 → 3210.1.1
74M3e5ndvM31M3:2-194Ribosomal_L13e3210 → 3210.1 → 3210.1.1
75m4e5ndvm41m4:2-138KOW,Ribosomal_L14e4 → 4.1 → 4.1.1
76M4e5ndvM41M4:3-138KOW,Ribosomal_L14e4 → 4.1 → 4.1.1
77m5e5ndvm51m5:2-175Ribosomal_L15e304 → 304.109 → 304.109.1
78M5e5ndvM51M5:2-175Ribosomal_L15e304 → 304.109 → 304.109.1
79m6e5ndvm61m6:3-199Ribosomal_L132490 → 2490.2 → 2490.2.1
80M6e5ndvM61M6:3-199Ribosomal_L132490 → 2490.2 → 2490.2.1
81m7e5ndvm71m7:2-156Ribosomal_L22218 → 218.2 → 218.2.1
82M7e5ndvM71M7:2-184Ribosomal_L22218 → 218.2 → 218.2.1
83m8e5ndvm81m8:2-186Ribosomal_L182490 → 2490.3 → 2490.3.1
84M8e5ndvM81M8:2-186Ribosomal_L182490 → 2490.3 → 2490.3.1
85m9e5ndvm91m9:2-56Ribosomal_L19e637 → 637.1 → 637.1.1
86m9e5ndvm92m9:57-189Ribosomal_L19e_C3050 → 3050.1 → 3050.1.1
87M9e5ndvM91M9:57-186Ribosomal_L19e_C3050 → 3050.1 → 3050.1.1
88M9e5ndvM92M9:2-56Ribosomal_L19e637 → 637.1 → 637.1.1
89n0e5ndvn01n0:70-172Ribosomal_L18A3115 → 3115.1 → 3115.1.1
90n0e5ndvn02n0:1-693115.1.1.03115 → 3115.1 → 3115.1.1
91N0e5ndvN01N0:1-693115.1.1.03115 → 3115.1 → 3115.1.1
92N0e5ndvN02N0:70-172Ribosomal_L18A3115 → 3115.1 → 3115.1.1
93n1e5ndvn11n1:2-160Ribosomal_L21e4 → 4.1 → 4.1.1
94N1e5ndvN11N1:2-160Ribosomal_L21e4 → 4.1 → 4.1.1
95n2e5ndvn21n2:11-108Ribosomal_L22e3715 → 3715.1 → 3715.1.1
96N2e5ndvN21N2:10-108Ribosomal_L22e3715 → 3715.1 → 3715.1.1
97n3e5ndvn31n3:2-137Ribosomal_L143174 → 3174.1 → 3174.1.1
98N3e5ndvN31N3:6-137Ribosomal_L143174 → 3174.1 → 3174.1.1
99n4e5ndvn41n4:1-135Ribosomal_L24e377 → 377.1 → 377.1.1
100N4e5ndvN41N4:1-63Ribosomal_L24e377 → 377.1 → 377.1.1
101n5e5ndvn51n5:23-142Ribosomal_L23,Ribosomal_L23eN304 → 304.109 → 304.109.1
102N5e5ndvN51N5:25-142Ribosomal_L23,Ribosomal_L23eN304 → 304.109 → 304.109.1
103n6e5ndvn61n6:2-124KOW, Ribosomal_L264 → 4.1 → 4.1.1
104N6e5ndvN61N6:2-126KOW, Ribosomal_L264 → 4.1 → 4.1.1
105n7e5ndvn71n7:2-136Ribosomal_L27e4 → 4.1 → 4.1.1
106N7e5ndvN71N7:2-136Ribosomal_L27e4 → 4.1 → 4.1.1
107n8e5ndvn81n8:2-149Ribosomal_L27A2490 → 2490.3 → 2490.3.1
108N8e5ndvN81N8:2-149Ribosomal_L27A2490 → 2490.3 → 2490.3.1
109n9e5ndvn91n9:2-59Ribosomal_L29e3212 → 3212.1 → 3212.1.1
110N9e5ndvN91N9:2-57Ribosomal_L29e3212 → 3212.1 → 3212.1.1
111o0e5ndvo01o0:6-105Ribosomal_L7Ae301 → 301.1 → 301.1.1
112O0e5ndvO01O0:9-105Ribosomal_L7Ae301 → 301.1 → 301.1.1
113o1e5ndvo11o1:4-112Ribosomal_L31e259 → 259.1 → 259.1.1
114O1e5ndvO11O1:4-112Ribosomal_L31e259 → 259.1 → 259.1.1
115o2e5ndvo21o2:2-128Ribosomal_L32e2490 → 2490.1 → 2490.1.1
116O2e5ndvO21O2:2-126Ribosomal_L32e2490 → 2490.1 → 2490.1.1
117o3e5ndvo31o3:2-107Ribosomal_L35Ae1 → 1.1 → 1.1.7
118O3e5ndvO31O3:2-107Ribosomal_L35Ae1 → 1.1 → 1.1.7
119o4e5ndvo41o4:2-113Ribosomal_L34e377 → 377.12 → 377.12.1
120O4e5ndvO41O4:2-113Ribosomal_L34e377 → 377.12 → 377.12.1
121o5e5ndvo51o5:2-120Ribosomal_L29192 → 192.4 → 192.4.1
122O5e5ndvO51O5:2-120Ribosomal_L29192 → 192.4 → 192.4.1
123o6e5ndvo61o6:24-100Ribosomal_L36e3166 → 3166.1 → 3166.1.1
124O6e5ndvO61O6:24-98Ribosomal_L36e3166 → 3166.1 → 3166.1.1
125o7e5ndvo71o7:2-88Ribosomal_L37e375 → 375.1 → 375.1.1
126O7e5ndvO71O7:2-85Ribosomal_L37e375 → 375.1 → 375.1.1
127o8e5ndvo81o8:2-78Ribosomal_L38e896 → 896.1 → 896.1.1
128O8e5ndvO81O8:2-78Ribosomal_L38e896 → 896.1 → 896.1.1
129o9e5ndvo91o9:2-51Ribosomal_L39585 → 585.1 → 585.1.1
130O9e5ndvO91O9:2-51Ribosomal_L39585 → 585.1 → 585.1.1
131q0e5ndvq01q0:77-128Ribosomal_L40e375 → 375.1 → 375.1.1
132Q0e5ndvQ01Q0:77-128Ribosomal_L40e375 → 375.1 → 375.1.1
133q1e5ndvq11q1:1-25Ribosomal_L416069 → 6069.1 → 6069.1.1
134Q1e5ndvQ11Q1:1-25Ribosomal_L416069 → 6069.1 → 6069.1.1
135q2e5ndvq21q2:2-106Ribosomal_L44375 → 375.1 → 375.1.1
136Q2e5ndvQ21Q2:2-106Ribosomal_L44375 → 375.1 → 375.1.1
137q3e5ndvq31q3:2-92Ribosomal_L37ae375 → 375.1 → 375.1.1
138Q3e5ndvQ31Q3:2-92Ribosomal_L37ae375 → 375.1 → 375.1.1
139s0e5ndvs01s0:2-207Ribosomal_S22007 → 2007.6 → 2007.6.1
140S0e5ndvS01S0:2-207Ribosomal_S22007 → 2007.6 → 2007.6.1
141s1e5ndvs11s1:114-235Ribosomal_S3Ae230 → 230.6 → 230.6.1
142s1e5ndvs12s1:20-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
143S1e5ndvS11S1:21-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
144S1e5ndvS12S1:114-231Ribosomal_S3Ae230 → 230.6 → 230.6.1
145s2e5ndvs21s2:34-108Ribosomal_S53274 → 3274.1 → 3274.1.1
146s2e5ndvs22s2:109-175Ribosomal_S5330 → 330.1 → 330.1.1
147s2e5ndvs23s2:176-250Ribosomal_S5_C212 → 212.1 → 212.1.1
148S2e5ndvS21S2:176-250Ribosomal_S5_C212 → 212.1 → 212.1.1
149S2e5ndvS22S2:109-175Ribosomal_S5330 → 330.1 → 330.1.1
150S2e5ndvS23S2:34-108Ribosomal_S53274 → 3274.1 → 3274.1.1
151s3e5ndvs31s3:3-91KH_2327 → 327.11 → 327.11.1
152s3e5ndvs32s3:92-225Ribosomal_S3_C230 → 230.2 → 230.2.1
153S3e5ndvS31S3:92-211Ribosomal_S3_C230 → 230.2 → 230.2.1
154S3e5ndvS32S3:3-91KH_2327 → 327.11 → 327.11.1
155s4e5ndvs41s4:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
156s4e5ndvs42s4:176-261KOW,40S_S4_C4 → 4.1 → 4.1.1
157s4e5ndvs43s4:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
158S4e5ndvS41S4:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
159S4e5ndvS42S4:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
160S4e5ndvS43S4:176-259KOW,40S_S4_C4 → 4.1 → 4.1.1
161s5e5ndvs51s5:20-225Ribosomal_S7167 → 167.1 → 167.1.1
162S5e5ndvS51S5:20-225Ribosomal_S7167 → 167.1 → 167.1.1
163s6e5ndvs61s6:1-218Ribosomal_S6e239 → 239.1 → 239.1.1
164S6e5ndvS61S6:1-224Ribosomal_S6e239 → 239.1 → 239.1.1
165s7e5ndvs71s7:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
166s7e5ndvs72s7:2-105Ribosomal_S7e327 → 327.18 → 327.18.1
167S7e5ndvS71S7:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
168S7e5ndvS72S7:4-105Ribosomal_S7e327 → 327.18 → 327.18.1
169s8e5ndvs81s8:2-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
170S8e5ndvS81S8:2-197Ribosomal_S8e3174 → 3174.1 → 3174.1.1
171s9e5ndvs91s9:2-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
172S9e5ndvS91S9:2-175Ribosomal_S4,S4221 → 221.1 → 221.1.2
173sMe5ndvsM1sM:23-85,sM:119-1653451.1.1.03451 → 3451.1 → 3451.1.1
174SMe5ndvSM1SM:9-166HABP4_PAI-RBP13451 → 3451.1 → 3451.1.1
175sRe5ndvsR1sR:2-319WD405 → 5.1 → 5.1.4
176SRe5ndvSR1SR:3-319WD405 → 5.1 → 5.1.4

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors