PDB 5OQM
ELECTRON MICROSCOPY0 chains68 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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9 domainsChain bview chain
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7 domainsChain cview chain
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2 domainsChain Hview chain
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2 domainsChain Jview chain
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3 domainsAll Domains (68)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e5oqm03 | 0:503-723 | Helicase_C_2 | 2004 → 2004.1 → 2004.1.1 |
| 2 | 3 | e5oqm31 | 3:8-79 | zf-C3HC4_5 | 376 → 376.1 → 376.1.1 |
| 3 | 3 | e5oqm32 | 3:80-145 | MAT1 | 386 → 386.1 → 386.1.1 |
| 4 | 4 | e5oqm41 | 4:22-285 | Tfb4 | 2006 → 2006.1 → 2006.1.6 |
| 5 | 4 | e5oqm42 | 4:286-323 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 6 | 5 | e5oqm51 | 5:2-67 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 7 | 6 | e5oqm61 | 6:375-457 | C1_4 | 376 → 376.1 → 376.1.2 |
| 8 | 6 | e5oqm62 | 6:123-307 | Ssl1 | 2006 → 2006.1 → 2006.1.6 |
| 9 | 6 | e5oqm63 | 6:308-374 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 10 | 7 | e5oqm71 | 7:546-722 | ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 11 | 7 | e5oqm72 | 7:723-770 | ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 12 | 7 | e5oqm73 | 7:363-545 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 13 | a | e5oqma1 | a:10-52,a:100-203,a:277-289 | Med6 | 3195 → 3195.1 → 3195.1.1 |
| 14 | A | e5oqmA1 | A:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 15 | A | e5oqmA2 | A:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 16 | A | e5oqmA3 | A:1142-1272 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 17 | A | e5oqmA4 | A:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 18 | A | e5oqmA5 | A:3-336 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 19 | A | e5oqmA6 | A:337-374,A:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 20 | A | e5oqmA7 | A:1113-1141,A:1273-1330 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 21 | A | e5oqmA8 | A:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 22 | A | e5oqmA9 | A:1060-1112,A:1331-1452 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 23 | b | e5oqmb1 | b:31-171,b:195-210 | 3560.1.1.0 | 3560 → 3560.1 → 3560.1.1 |
| 24 | B | e5oqmB1 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 25 | B | e5oqmB2 | B:631-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 26 | B | e5oqmB3 | B:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 27 | B | e5oqmB4 | B:20-218,B:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 28 | B | e5oqmB5 | B:1098-1223 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 29 | B | e5oqmB6 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 30 | B | e5oqmB7 | B:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 31 | c | e5oqmc1 | c:4-111 | Med11 | 3712 → 3712.1 → 3712.1.1 |
| 32 | C | e5oqmC1 | C:42-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 33 | C | e5oqmC2 | C:4-41,C:173-265 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 34 | d | e5oqmd1 | d:199-684 | 3561.1.1.0 | 3561 → 3561.1 → 3561.1.1 |
| 35 | D | e5oqmD1 | D:24-71,D:131-221 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 36 | e | e5oqme1 | e:2-93,e:159-301 | Med18 | 868 → 868.1 → 868.1.1 |
| 37 | E | e5oqmE1 | E:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 38 | E | e5oqmE2 | E:3-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 39 | f | e5oqmf1 | f:2-209 | Med20 | 868 → 868.1 → 868.1.1 |
| 40 | F | e5oqmF1 | F:72-154 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 41 | g | e5oqmg1 | g:2-118 | 3559.1.1.0 | 3559 → 3559.1 → 3559.1.1 |
| 42 | G | e5oqmG1 | G:1-68 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 43 | G | e5oqmG2 | G:69-171 | S1 | 2 → 2.1 → 2.1.1 |
| 44 | H | e5oqmH1 | H:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 45 | i | e5oqmi1 | i:113-211 | Med7 | 4207 → 4207.1 → 4207.1.2 |
| 46 | i | e5oqmi2 | i:16-73 | 3548.1.1.0 | 3548 → 3548.1 → 3548.1.1 |
| 47 | I | e5oqmI1 | I:50-117 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 48 | I | e5oqmI2 | I:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 49 | J | e5oqmJ1 | J:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 50 | K | e5oqmK1 | K:1-112 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 51 | L | e5oqmL1 | L:26-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 52 | M | e5oqmM1 | M:16-68 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 53 | M | e5oqmM2 | M:67-218 | TFIIB | 101 → 101.1 → 101.1.10 |
| 54 | M | e5oqmM3 | M:233-326 | TFIIB | 101 → 101.1 → 101.1.10 |
| 55 | n | e5oqmn1 | n:3-138 | Med21 | 4207 → 4207.1 → 4207.1.1 |
| 56 | o | e5oqmo1 | o:20-94 | 3548.1.1.0 | 3548 → 3548.1 → 3548.1.1 |
| 57 | O | e5oqmO1 | O:157-240 | TBP | 331 → 331.1 → 331.1.1 |
| 58 | O | e5oqmO2 | O:61-156 | TBP | 331 → 331.1 → 331.1.1 |
| 59 | Q | e5oqmQ1 | Q:21-35,Q:97-142,Q:327-415 | 59.1.1.0 | 59 → 59.1 → 59.1.1 |
| 60 | R | e5oqmR1 | R:58-138,R:207-227 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 61 | R | e5oqmR2 | R:291-351 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 62 | U | e5oqmU1 | U:241-286 | TFIIA | 74 → 74.1 → 74.1.1 |
| 63 | U | e5oqmU2 | U:2-47 | TFIIA | 104 → 104.1 → 104.1.1 |
| 64 | V | e5oqmV1 | V:55-119 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 65 | V | e5oqmV2 | V:5-54 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 66 | X | e5oqmX1 | X:123-188 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 67 | X | e5oqmX2 | X:189-249 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 68 | X | e5oqmX3 | X:250-283 | TFA2_E-tether | 101 → 101.1 → 101.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors