ECODEvolutionary Classification of Protein Domains

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PDB 5RMD

X-RAY DIFFRACTION1.92 Å0 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

6 domains

e5rmdA1(A:148-230)e5rmdA2(A:101-147)e5rmdA3(A:439-592)e5rmdA4(A:231-438)e5rmdA5(A:47-100)e5rmdA6(A:1-46)

Chain Bview chain

6 domains

e5rmdB1(B:47-100)e5rmdB2(B:101-147)e5rmdB3(B:439-593)e5rmdB4(B:2-46)e5rmdB5(B:231-438)e5rmdB6(B:148-230)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5rmdA1	A:148-230	CoV_NSP13_1B	1 → 1.1 → 1.1.7
2	A	e5rmdA2	A:101-147	CoV_NSP13_stalk	1168 → 1168.1 → 1168.1.1
3	A	e5rmdA3	A:439-592	AAA_12	2004 → 2004.1 → 2004.1.1
4	A	e5rmdA4	A:231-438	AAA_11	2004 → 2004.1 → 2004.1.1
5	A	e5rmdA5	A:47-100	CoV_NSP13_ZBD	376 → 376.1 → 376.1.1
6	A	e5rmdA6	A:1-46	CoV_NSP13_ZBD	376 → 376.1 → 376.1.1
7	B	e5rmdB1	B:47-100	CoV_NSP13_ZBD	376 → 376.1 → 376.1.1
8	B	e5rmdB2	B:101-147	CoV_NSP13_stalk	1168 → 1168.1 → 1168.1.1
9	B	e5rmdB3	B:439-593	AAA_12	2004 → 2004.1 → 2004.1.1
10	B	e5rmdB4	B:2-46	CoV_NSP13_ZBD	376 → 376.1 → 376.1.1
11	B	e5rmdB5	B:231-438	AAA_11	2004 → 2004.1 → 2004.1.1
12	B	e5rmdB6	B:148-230	CoV_NSP13_1B	1 → 1.1 → 1.1.7

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors