PDB 5SVA
ELECTRON MICROSCOPY0 chains64 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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1 domainChain Aview chain
9 domainsChain bview chain
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7 domainsChain cview chain
2 domainsChain Cview chain
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2 domainsChain fview chain
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2 domainsChain Hview chain
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2 domainsChain jview chain
2 domainsChain Jview chain
1 domainChain Kview chain
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1 domainChain Mview chain
1 domainChain nview chain
2 domainsChain Nview chain
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2 domainsChain Wview chain
1 domainChain Xview chain
1 domainChain Yview chain
2 domainsChain Zview chain
2 domainsAll Domains (64)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5svaa1 | a:447-508 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 2 | A | e5svaA1 | A:1132-1242 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 3 | A | e5svaA2 | A:3-336 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 4 | A | e5svaA3 | A:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 5 | A | e5svaA4 | A:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 6 | A | e5svaA5 | A:1103-1131,A:1243-1300 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 7 | A | e5svaA6 | A:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 8 | A | e5svaA7 | A:1060-1102,A:1301-1455 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 9 | A | e5svaA8 | A:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 10 | A | e5svaA9 | A:337-374,A:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 11 | b | e5svab1 | b:2-64 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 12 | B | e5svaB1 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 13 | B | e5svaB2 | B:631-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 14 | B | e5svaB3 | B:20-218,B:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 15 | B | e5svaB4 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 16 | B | e5svaB5 | B:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 17 | B | e5svaB6 | B:1098-1224 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 18 | B | e5svaB7 | B:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 19 | c | e5svac1 | c:80-213 | TFIIB | 101 → 101.1 → 101.1.10 |
| 20 | c | e5svac2 | c:22-79 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 21 | C | e5svaC1 | C:38-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 22 | C | e5svaC2 | C:3-37,C:173-268 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 23 | d | e5svad1 | d:228-286 | TFIIA | 74 → 74.1 → 74.1.1 |
| 24 | d | e5svad2 | d:2-61 | TFIIA | 104 → 104.1 → 104.1.1 |
| 25 | D | e5svaD1 | D:3-71,D:131-221 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 26 | e | e5svae1 | e:4-54 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 27 | e | e5svae2 | e:55-120 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 28 | E | e5svaE1 | E:143-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 29 | E | e5svaE2 | E:2-142 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 30 | f | e5svaf1 | f:99-142,f:327-417 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 31 | F | e5svaF1 | F:72-155 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 32 | g | e5svag1 | g:54-139,g:210-227 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 33 | g | e5svag2 | g:291-359 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 34 | G | e5svaG1 | G:69-171 | S1 | 2 → 2.1 → 2.1.1 |
| 35 | G | e5svaG2 | G:1-68 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 36 | h | e5svah1 | h:119-160 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 37 | h | e5svah2 | h:12-95 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 38 | H | e5svaH1 | H:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 39 | i | e5svai1 | i:188-250 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 40 | i | e5svai2 | i:125-187 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 41 | I | e5svaI1 | I:50-120 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 42 | I | e5svaI2 | I:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 43 | j | e5svaj1 | j:157-240 | TBP | 331 → 331.1 → 331.1.1 |
| 44 | j | e5svaj2 | j:61-156 | TBP | 331 → 331.1 → 331.1.1 |
| 45 | J | e5svaJ1 | J:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 46 | K | e5svaK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 47 | L | e5svaL1 | L:25-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 48 | M | e5svaM1 | M:1-50,M:100-192 | Med6 | 3195 → 3195.1 → 3195.1.1 |
| 49 | n | e5svan01 | n:1-137 | YEATS | 11 → 11.2 → 11.2.1 |
| 50 | n | e5svan02 | n:170-243 | BET | 3525 → 3525.1 → 3525.1.1 |
| 51 | N | e5svaN1 | N:23-173,N:194-210 | 3560.1.1.0 | 3560 → 3560.1 → 3560.1.1 |
| 52 | O | e5svaO1 | O:4-115 | Med11 | 3712 → 3712.1 → 3712.1.1 |
| 53 | P | e5svaP1 | P:182-687 | 3561.1.1.0 | 3561 → 3561.1 → 3561.1.1 |
| 54 | Q | e5svaQ1 | Q:2-107,Q:159-301 | Med18 | 868 → 868.1 → 868.1.1 |
| 55 | R | e5svaR1 | R:2-210 | Med20 | 868 → 868.1 → 868.1.1 |
| 56 | S | e5svaS1 | S:1-121 | 3559.1.1.0 | 3559 → 3559.1 → 3559.1.1 |
| 57 | U | e5svaU1 | U:108-205 | Med7 | 4207 → 4207.1 → 4207.1.2 |
| 58 | U | e5svaU2 | U:11-83 | 3548.1.1.0 | 3548 → 3548.1 → 3548.1.1 |
| 59 | W | e5svaW1 | W:3-133 | Med21 | 4207 → 4207.1 → 4207.1.1 |
| 60 | X | e5svaX1 | X:16-107 | 3548.1.1.0 | 3548 → 3548.1 → 3548.1.1 |
| 61 | Y | e5svaY2 | Y:504-718 | Helicase_C_2 | 2004 → 2004.1 → 2004.1.1 |
| 62 | Y | e5svaY3 | Y:18-244 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
| 63 | Z | e5svaZ1 | Z:294-538 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 64 | Z | e5svaZ2 | Z:549-785 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors