ECODEvolutionary Classification of Protein Domains

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PDB 5VM9

X-RAY DIFFRACTION3.28 Å0 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

5 domains

e5vm9A1(A:45-129)e5vm9A2(A:225-347)e5vm9A3(A:16-44,A:130-224,A:348-409)e5vm9A4(A:410-579,A:838-860)e5vm9A5(A:580-836)

Chain Cview chain

5 domains

e5vm9C1(C:15-44,C:130-224,C:348-409)e5vm9C2(C:410-579,C:839-860)e5vm9C3(C:580-818)e5vm9C4(C:45-129)e5vm9C5(C:225-347)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vm9A1	A:45-129	ArgoN	304 → 304.112 → 304.112.1
2	A	e5vm9A2	A:225-347	PAZ	4 → 4.1 → 4.1.1
3	A	e5vm9A3	A:16-44,A:130-224,A:348-409	ArgoL1	304 → 304.112 → 304.112.1
4	A	e5vm9A4	A:410-579,A:838-860	Piwi,ArgoMid	7590 → 7590.1 → 7590.1.1
5	A	e5vm9A5	A:580-836	Piwi	2484 → 2484.1 → 2484.1.1
6	C	e5vm9C1	C:15-44,C:130-224,C:348-409	ArgoL1	304 → 304.112 → 304.112.1
7	C	e5vm9C2	C:410-579,C:839-860	Piwi,ArgoMid	7590 → 7590.1 → 7590.1.1
8	C	e5vm9C3	C:580-818	Piwi	2484 → 2484.1 → 2484.1.1
9	C	e5vm9C4	C:45-129	ArgoN	304 → 304.112 → 304.112.1
10	C	e5vm9C5	C:225-347	PAZ	4 → 4.1 → 4.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors