ECODEvolutionary Classification of Protein Domains

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PDB 5VNL

X-RAY DIFFRACTION2.39 Å0 chains11 ECOD domains

View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

5 domains

e5vnlA1(A:3-50,A:394-517)e5vnlA2(A:518-620)e5vnlA3(A:50-125)e5vnlA4(A:126-393)e5vnlA5(A:621-723,A:746-764)

Chain Bview chain

5 domains

e5vnlB1(B:416-500)e5vnlB2(B:346-415,B:744-838)e5vnlB3(B:501-743)e5vnlB4(B:839-943)e5vnlB5(B:944-1093)

Chain Cview chain

1 domain

e5vnlC1(C:1-157)

All Domains (11)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vnlA1	A:3-50,A:394-517	Sec23_BS	11 → 11.1 → 11.1.5
2	A	e5vnlA2	A:518-620	Sec23_helical	610 → 610.2 → 610.2.1
3	A	e5vnlA3	A:50-125	zf-Sec23_Sec24	375 → 375.1 → 375.1.1
4	A	e5vnlA4	A:126-393	Sec23_trunk	2006 → 2006.1 → 2006.1.6
5	A	e5vnlA5	A:621-723,A:746-764	Gelsolin	224 → 224.1 → 224.1.1
6	B	e5vnlB1	B:416-500	zf-Sec23_Sec24	375 → 375.1 → 375.1.1
7	B	e5vnlB2	B:346-415,B:744-838	Sec23_BS	11 → 11.1 → 11.1.5
8	B	e5vnlB3	B:501-743	Sec23_trunk	2006 → 2006.1 → 2006.1.6
9	B	e5vnlB4	B:839-943	Sec23_helical	610 → 610.2 → 610.2.1
10	B	e5vnlB5	B:944-1093	Gelsolin	224 → 224.1 → 224.1.1
11	C	e5vnlC1	C:1-157	Longin	223 → 223.2 → 223.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors