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PDB 5VPP

X-RAY DIFFRACTION3.70 Å0 chains110 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (110)

#ChainDomain IDRangeFamilyClassification
1QBe5vppQB1QB:7-241Ribosomal_S22007 → 2007.6 → 2007.6.1
2QCe5vppQC1QC:2-106KH_2327 → 327.11 → 327.11.1
3QCe5vppQC2QC:107-208Ribosomal_S3_C230 → 230.2 → 230.2.1
4QDe5vppQD1QD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
5QEe5vppQE1QE:5-73Ribosomal_S5330 → 330.1 → 330.1.1
6QEe5vppQE2QE:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
7QFe5vppQF1QF:1-101Ribosomal_S6304 → 304.12 → 304.12.1
8QGe5vppQG1QG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
9QHe5vppQH1QH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
10QHe5vppQH2QH:1-66Ribosomal_S8320 → 320.2 → 320.2.1
11QIe5vppQI1QI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
12QJe5vppQJ1QJ:3-101Ribosomal_S10304 → 304.44 → 304.44.1
13QKe5vppQK1QK:11-129Ribosomal_S112484 → 2484.1 → 2484.1.1
14QLe5vppQL1QL:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
15QMe5vppQM1QM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
16QNe5vppQN1QN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
17QOe5vppQO1QO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18QPe5vppQP1QP:1-84Ribosomal_S16837 → 837.1 → 837.1.1
19QQe5vppQQ1QQ:2-101Ribosomal_S172 → 2.1 → 2.1.1
20QRe5vppQR1QR:19-88Ribosomal_S18101 → 101.1 → 101.1.1
21QSe5vppQS1QS:4-82Ribosomal_S19838 → 838.1 → 838.1.1
22QTe5vppQT1QT:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
23R0e5vppR01R0:2-83325.1.8.0325 → 325.1 → 325.1.8
24R1e5vppR11R1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
25R2e5vppR21R2:4-72Ribosomal_L29192 → 192.4 → 192.4.1
26R3e5vppR31R3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
27R4e5vppR41R4:2-35Ribosomal_L314987 → 4987.1 → 4987.1.1
28R5e5vppR51R5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
29R6e5vppR61R6:5-53Ribosomal_L33375 → 375.1 → 375.1.1
30R7e5vppR71R7:1-49Ribosomal_L343074 → 3074.1 → 3074.1.1
31R8e5vppR81R8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
32R9e5vppR91R9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
33RDe5vppRD1RD:127-273Ribosomal_L2_C4 → 4.1 → 4.1.1
34RDe5vppRD2RD:2-126Ribosomal_L22 → 2.1 → 2.1.1
35REe5vppRE1RE:1-205Ribosomal_L31 → 1.1 → 1.1.7
36RFe5vppRF1RF:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
37RGe5vppRG1RG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
38RHe5vppRH1RH:83-171Ribosomal_L6318 → 318.1 → 318.1.1
39RHe5vppRH2RH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
40RIe5vppRI1RI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
41RIe5vppRI2RI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
42RNe5vppRN1RN:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
43ROe5vppRO1RO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
44RPe5vppRP1RP:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
45RQe5vppRQ1RQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
46RRe5vppRR1RR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
47RSe5vppRS1RS:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
48RTe5vppRT1RT:1-137Ribosomal_L194 → 4.1 → 4.1.1
49RUe5vppRU1RU:2-118Ribosomal_L20143 → 143.2 → 143.2.1
50RVe5vppRV1RV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
51RWe5vppRW1RW:1-113Ribosomal_L22218 → 218.2 → 218.2.1
52RXe5vppRX1RX:3-94Ribosomal_L23304 → 304.109 → 304.109.1
53RYe5vppRY1RY:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
54RZe5vppRZ1RZ:93-183Ribosomal_TL5_C240 → 240.1 → 240.1.1
55RZe5vppRZ2RZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
56XBe5vppXB1XB:7-241Ribosomal_S22007 → 2007.6 → 2007.6.1
57XCe5vppXC1XC:107-208Ribosomal_S3_C230 → 230.2 → 230.2.1
58XCe5vppXC2XC:2-106KH_2327 → 327.11 → 327.11.1
59XDe5vppXD1XD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
60XEe5vppXE1XE:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
61XEe5vppXE2XE:5-73Ribosomal_S5330 → 330.1 → 330.1.1
62XFe5vppXF1XF:1-101Ribosomal_S6304 → 304.12 → 304.12.1
63XGe5vppXG1XG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
64XHe5vppXH1XH:1-66Ribosomal_S8320 → 320.2 → 320.2.1
65XHe5vppXH2XH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
66XIe5vppXI1XI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
67XJe5vppXJ1XJ:3-101Ribosomal_S10304 → 304.44 → 304.44.1
68XKe5vppXK1XK:11-129Ribosomal_S112484 → 2484.1 → 2484.1.1
69XLe5vppXL1XL:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
70XMe5vppXM1XM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
71XNe5vppXN1XN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
72XOe5vppXO1XO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
73XPe5vppXP1XP:1-84Ribosomal_S16837 → 837.1 → 837.1.1
74XQe5vppXQ1XQ:2-101Ribosomal_S172 → 2.1 → 2.1.1
75XRe5vppXR1XR:19-88Ribosomal_S18101 → 101.1 → 101.1.1
76XSe5vppXS1XS:4-82Ribosomal_S19838 → 838.1 → 838.1.1
77XTe5vppXT1XT:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
78Y0e5vppY01Y0:2-83325.1.8.0325 → 325.1 → 325.1.8
79Y1e5vppY11Y1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
80Y2e5vppY21Y2:4-72Ribosomal_L29192 → 192.4 → 192.4.1
81Y3e5vppY31Y3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
82Y4e5vppY41Y4:1-46Ribosomal_L314987 → 4987.1 → 4987.1.1
83Y5e5vppY51Y5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
84Y6e5vppY61Y6:5-53Ribosomal_L33375 → 375.1 → 375.1.1
85Y7e5vppY71Y7:1-49Ribosomal_L343074 → 3074.1 → 3074.1.1
86Y8e5vppY81Y8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
87Y9e5vppY91Y9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
88YDe5vppYD1YD:2-126Ribosomal_L22 → 2.1 → 2.1.1
89YDe5vppYD2YD:127-273Ribosomal_L2_C4 → 4.1 → 4.1.1
90YEe5vppYE1YE:1-205Ribosomal_L31 → 1.1 → 1.1.7
91YFe5vppYF1YF:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
92YGe5vppYG1YG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
93YHe5vppYH1YH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
94YHe5vppYH2YH:83-171Ribosomal_L6318 → 318.1 → 318.1.1
95YIe5vppYI1YI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
96YIe5vppYI2YI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
97YNe5vppYN1YN:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
98YOe5vppYO1YO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
99YPe5vppYP1YP:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
100YQe5vppYQ1YQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
101YRe5vppYR1YR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
102YSe5vppYS1YS:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
103YTe5vppYT1YT:1-137Ribosomal_L194 → 4.1 → 4.1.1
104YUe5vppYU1YU:2-118Ribosomal_L20143 → 143.2 → 143.2.1
105YVe5vppYV1YV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
106YWe5vppYW1YW:1-113Ribosomal_L22218 → 218.2 → 218.2.1
107YXe5vppYX1YX:3-94Ribosomal_L23304 → 304.109 → 304.109.1
108YYe5vppYY1YY:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
109YZe5vppYZ1YZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
110YZe5vppYZ2YZ:93-183Ribosomal_TL5_C240 → 240.1 → 240.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors