ECODEvolutionary Classification of Protein Domains

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PDB 5VPV

X-RAY DIFFRACTION2.60 Å0 chains11 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

4 domains

e5vpvA1(A:543-681)e5vpvA2(A:275-461)e5vpvA3(A:462-542)e5vpvA4(A:13-274)

Chain Bview chain

4 domains

e5vpvB1(B:275-461)e5vpvB2(B:543-679)e5vpvB3(B:2-274)e5vpvB4(B:462-542)

Chain Cview chain

3 domains

e5vpvC1(C:25-274)e5vpvC2(C:275-461)e5vpvC3(C:462-543)

All Domains (11)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vpvA1	A:543-681	AMP-binding_C	327 → 327.5 → 327.5.1
2	A	e5vpvA2	A:275-461	AMP-binding	323 → 323.1 → 323.1.1
3	A	e5vpvA3	A:462-542	4011.1.1.0	4011 → 4011.1 → 4011.1.1
4	A	e5vpvA4	A:13-274	AMP-binding,ACAS_N	323 → 323.1 → 323.1.1
5	B	e5vpvB1	B:275-461	AMP-binding	323 → 323.1 → 323.1.1
6	B	e5vpvB2	B:543-679	AMP-binding_C	327 → 327.5 → 327.5.1
7	B	e5vpvB3	B:2-274	AMP-binding,ACAS_N	323 → 323.1 → 323.1.1
8	B	e5vpvB4	B:462-542	4011.1.1.0	4011 → 4011.1 → 4011.1.1
9	C	e5vpvC1	C:25-274	AMP-binding,ACAS_N	323 → 323.1 → 323.1.1
10	C	e5vpvC2	C:275-461	AMP-binding	323 → 323.1 → 323.1.1
11	C	e5vpvC3	C:462-543	4011.1.1.0	4011 → 4011.1 → 4011.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors