PDB 5VT0
ELECTRON MICROSCOPY0 chains27 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Gview chain
2 domainsChain Hview chain
2 domainsChain Iview chain
10 domainsChain Jview chain
9 domainsChain Kview chain
1 domainAll Domains (27)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | G | e5vt0G1 | G:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | G | e5vt0G2 | G:8-52,G:174-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 3 | H | e5vt0H1 | H:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | H | e5vt0H2 | H:6-52,H:174-234 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | I | e5vt0I1 | I:3-152,I:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 6 | I | e5vt0I2 | I:227-234,I:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 7 | I | e5vt0I3 | I:153-226,I:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 8 | I | e5vt0I4 | I:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 9 | I | e5vt0I5 | I:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 10 | I | e5vt0I6 | I:828-938 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | I | e5vt0I7 | I:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 12 | I | e5vt0I8 | I:791-828,I:1058-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | I | e5vt0I9 | I:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 14 | I | e5vt0I10 | I:939-1057 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 15 | J | e5vt0J1 | J:1023-1131 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 16 | J | e5vt0J2 | J:932-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 17 | J | e5vt0J3 | J:895-931,J:1214-1375 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 18 | J | e5vt0J4 | J:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 19 | J | e5vt0J5 | J:16-341 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 20 | J | e5vt0J6 | J:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 21 | J | e5vt0J7 | J:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 22 | J | e5vt0J8 | J:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 23 | J | e5vt0J9 | J:1137-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | K | e5vt0K1 | K:2-80 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | L | e5vt0L1 | L:94-167,L:212-447 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 26 | L | e5vt0L2 | L:448-479 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 27 | L | e5vt0L3 | L:480-613 | Sigma70_r3,Sigma70_r4 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors