PDB 5XJ0
X-RAY DIFFRACTION4.00 Å0 chains30 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
12 domainsChain Eview chain
1 domainChain Gview chain
1 domainChain Hview chain
1 domainChain Yview chain
1 domainAll Domains (30)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5xj0A1 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | A | e5xj0A2 | A:6-49,A:173-230 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 3 | B | e5xj0B1 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | B | e5xj0B2 | B:4-49,B:173-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | C | e5xj0C1 | C:451-584 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 6 | C | e5xj0C2 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 7 | C | e5xj0C3 | C:992-1114 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e5xj0C4 | C:660-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 9 | C | e5xj0C6 | C:585-659 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 10 | C | e5xj0C5 | C:1-141,C:331-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | C | e5xj0C7 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | D | e5xj0D1 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 13 | D | e5xj0D2 | D:217-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 14 | D | e5xj0D3 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 15 | D | e5xj0D4 | D:2-55,D:82-165,D:448-621 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 16 | D | e5xj0D5 | D:622-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 17 | D | e5xj0D6 | D:209-216,D:341-388 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e5xj0D7 | D:1201-1269,D:1331-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 19 | D | e5xj0D8 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 20 | D | e5xj0D9 | D:396-447 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 21 | D | e5xj0D10 | D:166-208,D:389-395 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e5xj0D11 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 23 | D | e5xj0D12 | D:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | E | e5xj0E1 | E:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e5xj0F1 | F:74-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 26 | F | e5xj0F2 | F:258-288,F:310-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 27 | F | e5xj0F3 | F:318-412 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 28 | G | e5xj0G1 | G:4-138 | P23-45_gp39_N | 243 → 243.15 → 243.15.1 |
| 29 | H | e5xj0H1 | H:5-107 | P23-45_gp39_N | 243 → 243.15 → 243.15.1 |
| 30 | Y | e5xj0Y1 | Y:1-34 | 7018.1.1.0 | 7018 → 7018.1 → 7018.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors