PDB 6GMH
ELECTRON MICROSCOPY0 chains48 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
9 domainsChain Wview chain
1 domainChain Yview chain
1 domainAll Domains (48)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e6gmhA1 | A:11-152,A:182-350 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e6gmhA2 | A:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 3 | A | e6gmhA3 | A:345-388,A:450-535 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e6gmhA4 | A:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e6gmhA5 | A:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 6 | A | e6gmhA6 | A:389-449 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 7 | A | e6gmhA7 | A:1165-1297 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 8 | A | e6gmhA8 | A:1135-1164,A:1298-1360 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 9 | A | e6gmhA9 | A:1083-1134,A:1361-1484,A:1530-1543 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 10 | B | e6gmhB1 | B:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 11 | B | e6gmhB2 | B:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 12 | B | e6gmhB3 | B:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 13 | B | e6gmhB4 | B:16-67,B:87-200,B:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 14 | B | e6gmhB5 | B:769-805,B:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 15 | B | e6gmhB6 | B:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 16 | B | e6gmhB7 | B:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 17 | C | e6gmhC1 | C:2-42,C:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | C | e6gmhC2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | D | e6gmhD1 | D:14-139 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 20 | E | e6gmhE1 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 21 | E | e6gmhE2 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 22 | F | e6gmhF1 | F:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 23 | G | e6gmhG1 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 24 | G | e6gmhG2 | G:78-171 | S1 | 2 → 2.1 → 2.1.1 |
| 25 | H | e6gmhH1 | H:2-149 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 26 | I | e6gmhI1 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 27 | I | e6gmhI2 | I:9-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 28 | J | e6gmhJ1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | K | e6gmhK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 30 | L | e6gmhL1 | L:13-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 31 | M | e6gmhM1 | M:470-477,M:538-756 | Tex_central_region | 4342 → 4342.1 → 4342.1.1 |
| 32 | M | e6gmhM2 | M:757-944 | YqgF | 2484 → 2484.1 → 2484.1.1 |
| 33 | M | e6gmhM3 | M:1048-1144 | HHH_9 | 102 → 102.1 → 102.1.1 |
| 34 | M | e6gmhM4 | M:945-1039 | HHH_7 | 102 → 102.1 → 102.1.1 |
| 35 | M | e6gmhM5 | M:284-404 | HTH_44 | 101 → 101.26 → 101.26.1 |
| 36 | M | e6gmhM6 | M:1145-1176,M:1226-1287 | Spt6_S1 | 2 → 2.1 → 2.1.1 |
| 37 | M | e6gmhM7 | M:405-421,M:442-470 | 632.13.1.0 | 632 → 632.13 → 632.13.1 |
| 38 | M | e6gmhM8 | M:1422-1519 | SH2_2 | 214 → 214.1 → 214.1.1 |
| 39 | M | e6gmhM9 | M:1327-1421 | SH2_2 | 214 → 214.1 → 214.1.1 |
| 40 | W | e6gmhW1 | W:5-304 | WD40, ANAPC4_WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 41 | Y | e6gmhY1 | Y:2-117 | Spt4 | 375 → 375.1 → 375.1.1 |
| 42 | Z | e6gmhZ1 | Z:269-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 43 | Z | e6gmhZ2 | Z:176-268 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 44 | Z | e6gmhZ3 | Z:471-525 | KOW | 4 → 4.1 → 4.1.1 |
| 45 | Z | e6gmhZ4 | Z:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 46 | Z | e6gmhZ5 | Z:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 47 | Z | e6gmhZ6 | Z:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 48 | Z | e6gmhZ7 | Z:526-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors