PDB 6JCY
X-RAY DIFFRACTION3.10 Å0 chains22 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
8 domainsChain Eview chain
1 domainChain Fview chain
2 domainsAll Domains (22)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e6jcyA1 | A:3-47,A:170-223 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e6jcyA2 | A:48-169 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e6jcyB1 | B:48-169 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | B | e6jcyB2 | B:1-47,B:170-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | C | e6jcyC1 | C:639-709 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 6 | C | e6jcyC2 | C:748-879 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 7 | C | e6jcyC3 | C:710-747,C:880-1035 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 8 | C | e6jcyC4 | C:503-638 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e6jcyC5 | C:182-376 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 10 | C | e6jcyC6 | C:1036-1161 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 11 | C | e6jcyC7 | C:23-181,C:377-502 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 12 | D | e6jcyD1 | D:3-141,D:230-422 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 13 | D | e6jcyD2 | D:423-453,D:494-575 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 14 | D | e6jcyD3 | D:454-493 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 15 | D | e6jcyD4 | D:576-731 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 16 | D | e6jcyD5 | D:732-889 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 17 | D | e6jcyD6 | D:890-982 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 18 | D | e6jcyD7 | D:983-1012,D:1026-1043,D:1116-1191,D:1202-1282 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 19 | D | e6jcyD8 | D:1044-1115 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | E | e6jcyE1 | E:26-107 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 21 | F | e6jcyF1 | F:22-97,F:123-128 | Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 22 | F | e6jcyF2 | F:126-185 | Sigma70_r4_2 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors