PDB 6KE6
ELECTRON MICROSCOPY0 chains93 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 3Bview chain
1 domainChain 3Cview chain
1 domainChain 3Fview chain
1 domainChain 3Gview chain
1 domainChain 3Hview chain
1 domainChain 5Cview chain
1 domainChain 5Fview chain
1 domainChain 5Gview chain
1 domainChain 5Iview chain
1 domainChain 5Kview chain
1 domainChain A4view chain
2 domainsChain A5view chain
2 domainsChain A9view chain
1 domainChain AEview chain
2 domainsChain AFview chain
2 domainsChain B2view chain
3 domainsChain B3view chain
3 domainsChain B6view chain
1 domainChain B8view chain
1 domainChain BEview chain
2 domainsChain RAview chain
1 domainChain RCview chain
2 domainsChain REview chain
6 domainsChain RFview chain
1 domainChain RGview chain
1 domainChain RHview chain
1 domainChain RIview chain
2 domainsChain RJview chain
4 domainsChain RKview chain
2 domainsChain RLview chain
4 domainsChain RMview chain
4 domainsChain RSview chain
1 domainChain RTview chain
2 domainsChain Scview chain
1 domainChain SCview chain
2 domainsChain Sdview chain
1 domainChain SGview chain
1 domainChain SHview chain
1 domainChain SIview chain
2 domainsChain SJview chain
1 domainChain SKview chain
1 domainChain SMview chain
1 domainChain SNview chain
1 domainChain SOview chain
2 domainsChain SPview chain
1 domainChain SRview chain
1 domainChain STview chain
1 domainChain SXview chain
2 domainsChain SYview chain
1 domainChain SZview chain
1 domainAll Domains (93)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 3B | e6ke63B1 | 3B:82-326 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 2 | 3C | e6ke63C1 | 3C:86-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 3 | 3D | e6ke63D1 | 3D:288-329,3D:370-415 | Nop | 102 → 102.1 → 102.1.4 |
| 4 | 3D | e6ke63D2 | 3D:168-298 | Nop | 606 → 606.1 → 606.1.1 |
| 5 | 3D | e6ke63D3 | 3D:3-167 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 6 | 3E | e6ke63E1 | 3E:3-18,3E:38-154 | NOP5NT, Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 7 | 3E | e6ke63E2 | 3E:285-403 | Nop | 102 → 102.1 → 102.1.4 |
| 8 | 3E | e6ke63E3 | 3E:155-284 | Nop | 606 → 606.1 → 606.1.1 |
| 9 | 3F | e6ke63F1 | 3F:129-570 | WD40 | 5 → 5.1 → 5.1.4 |
| 10 | 3G | e6ke63G1 | 3G:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 11 | 3H | e6ke63H1 | 3H:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 12 | 5C | e6ke65C1 | 5C:58-473 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 13 | 5F | e6ke65F1 | 5F:2-183 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 14 | 5G | e6ke65G1 | 5G:84-267 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 15 | 5I | e6ke65I1 | 5I:65-379 | WD40, Beta-prop_NUP159_NUP214 | 5 → 5.1 → 5.1.4 |
| 16 | 5K | e6ke65K1 | 5K:57-182 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 17 | A4 | e6ke6A41 | A4:29-374 | WD40 | 5 → 5.1 → 5.1.4 |
| 18 | A4 | e6ke6A42 | A4:375-681,A4:731-776 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 19 | A5 | e6ke6A51 | A5:434-557 | Utp12 | 109 → 109.54 → 109.54.1 |
| 20 | A5 | e6ke6A52 | A5:3-372 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 21 | A9 | e6ke6A91 | A9:389-516 | 109.54.1.0 | 109 → 109.54 → 109.54.1 |
| 22 | AE | e6ke6AE1 | AE:2-432 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 23 | AE | e6ke6AE2 | AE:463-808 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 24 | AF | e6ke6AF1 | AF:34-364 | WD40 | 5 → 5.1 → 5.1.5 |
| 25 | AF | e6ke6AF2 | AF:2-33,AF:388-512 | UTP15_C | 109 → 109.54 → 109.54.1 |
| 26 | B1 | e6ke6B11 | B1:343-734 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 27 | B1 | e6ke6B12 | B1:2-223,B1:245-343 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 28 | B1 | e6ke6B13 | B1:735-856 | Utp12 | 109 → 109.54 → 109.54.1 |
| 29 | B2 | e6ke6B21 | B2:745-921 | Utp12 | 109 → 109.54 → 109.54.1 |
| 30 | B2 | e6ke6B22 | B2:5-385 | WD40, Beta-prop_WDR3_1st | 5 → 5.1 → 5.1.4 |
| 31 | B2 | e6ke6B23 | B2:386-687 | WD40, Beta-prop_WDR3_2nd | 5 → 5.1 → 5.1.4 |
| 32 | B3 | e6ke6B31 | B3:332-649 | WD40, Beta-prop_WDR75_2nd | 5 → 5.1 → 5.1.4 |
| 33 | B3 | e6ke6B32 | B3:650-817 | Utp13 | 109 → 109.54 → 109.54.1 |
| 34 | B3 | e6ke6B33 | B3:3-331 | WD40 | 5 → 5.1 → 5.1.4 |
| 35 | B6 | e6ke6B601 | B6:1-196 | U3_assoc_6, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 36 | B8 | e6ke6B81 | B8:235-591 | WD40 | 5 → 5.1 → 5.1.4 |
| 37 | BE | e6ke6BE1 | BE:350-684 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 38 | BE | e6ke6BE2 | BE:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 39 | RA | e6ke6RA1 | RA:2-21,RA:41-360 | Beta-prop_NOL10_N | 5 → 5.1 → 5.1.5 |
| 40 | RC | e6ke6RC1 | RC:120-212 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 41 | RC | e6ke6RC2 | RC:38-119 | KH_8 | 327 → 327.11 → 327.11.2 |
| 42 | RE | e6ke6RE1 | RE:1092-1237 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 43 | RE | e6ke6RE2 | RE:515-698 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 44 | RE | e6ke6RE3 | RE:699-905 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 45 | RE | e6ke6RE4 | RE:100-356 | Nrap | 316 → 316.1 → 316.1.1 |
| 46 | RE | e6ke6RE5 | RE:357-514 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 47 | RE | e6ke6RE6 | RE:906-983,RE:1010-1091 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 48 | RF | e6ke6RF1 | RF:3-272 | RRP7,RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 49 | RG | e6ke6RG1 | RG:29-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 50 | RH | e6ke6RH1 | RH:16-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 51 | RI | e6ke6RI1 | RI:64-178 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
| 52 | RI | e6ke6RI2 | RI:6-63,RI:179-257 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
| 53 | RJ | e6ke6RJ1 | RJ:54-235 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 54 | RJ | e6ke6RJ2 | RJ:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 55 | RJ | e6ke6RJ3 | RJ:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 56 | RJ | e6ke6RJ4 | RJ:236-305,RJ:614-636,RJ:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 57 | RK | e6ke6RK1 | RK:7-182,RK:287-366 | RTC | 328 → 328.6 → 328.6.1 |
| 58 | RK | e6ke6RK2 | RK:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 59 | RL | e6ke6RL1 | RL:498-661,RL:708-834 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 60 | RL | e6ke6RL2 | RL:211-433,RL:464-497 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 61 | RL | e6ke6RL3 | RL:3-210 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 62 | RL | e6ke6RL4 | RL:835-932 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 63 | RM | e6ke6RM1 | RM:498-661,RM:708-834 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 64 | RM | e6ke6RM2 | RM:211-433,RM:467-497 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 65 | RM | e6ke6RM3 | RM:3-66,RM:92-210 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 66 | RM | e6ke6RM4 | RM:835-932 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 67 | RS | e6ke6RS1 | RS:209-465 | Bystin | 109 → 109.4 → 109.4.1 |
| 68 | RT | e6ke6RT1 | RT:178-274 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 69 | RT | e6ke6RT2 | RT:95-177 | KH_8 | 327 → 327.11 → 327.11.2 |
| 70 | Sc | e6ke6Sc1 | Sc:3-82 | Ribosomal_S27e | 375 → 375.1 → 375.1.1 |
| 71 | SC | e6ke6SC1 | SC:114-233 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 72 | SC | e6ke6SC2 | SC:15-113 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 73 | Sd | e6ke6Sd1 | Sd:5-67 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 74 | SF | e6ke6SF1 | SF:13-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 75 | SF | e6ke6SF2 | SF:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 76 | SF | e6ke6SF3 | SF:176-241 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 77 | SG | e6ke6SG1 | SG:13-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 78 | SH | e6ke6SH1 | SH:1-125 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 79 | SI | e6ke6SI1 | SI:6-96,SI:116-117 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 80 | SI | e6ke6SI2 | SI:118-189 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 81 | SJ | e6ke6SJ1 | SJ:2-121,SJ:151-196 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 82 | SK | e6ke6SK1 | SK:12-182 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 83 | SM | e6ke6SM1 | SM:8-143 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 84 | SN | e6ke6SN1 | SN:25-143 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 85 | SO | e6ke6SO1 | SO:9-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 86 | SO | e6ke6SO2 | SO:83-142 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 87 | SP | e6ke6SP1 | SP:11-128 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 88 | SR | e6ke6SR1 | SR:3-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 89 | ST | e6ke6ST1 | ST:2-125 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 90 | SX | e6ke6SX1 | SX:68-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 91 | SX | e6ke6SX2 | SX:4-67 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 92 | SY | e6ke6SY1 | SY:42-144 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 93 | SZ | e6ke6SZ1 | SZ:4-105 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors