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PDB 6KQD

X-RAY DIFFRACTION3.30 Å0 chains54 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (54)

#ChainDomain IDRangeFamilyClassification
1Ae6kqdA1A:4-49,A:173-229RNA_pol_L305 → 305.1 → 305.1.1
2Ae6kqdA2A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be6kqdB1B:7-49,B:173-228RNA_pol_L305 → 305.1 → 305.1.1
4Be6kqdB2B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce6kqdC1C:457-5914042.1.1.04042 → 4042.1 → 4042.1.1
6Ce6kqdC2C:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
7Ce6kqdC3C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
8Ce6kqdC4C:1-141,C:331-456RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
9Ce6kqdC5C:663-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
10Ce6kqdC6C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
11Ce6kqdC7C:592-662325.1.7.0325 → 325.1 → 325.1.7
12De6kqdD1D:216-340RPOC_hybrid325 → 325.1 → 325.1.6
13De6kqdD2D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
14De6kqdD3D:1110-1200275.1.1.0275 → 275.1 → 275.1.1
15De6kqdD4D:1201-1269,D:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
16De6kqdD5D:396-448325.1.7.0325 → 325.1 → 325.1.7
17De6kqdD6D:610-653,D:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
18De6kqdD7D:166-207,D:390-395325.1.7.0325 → 325.1 → 325.1.7
19De6kqdD8D:1270-1330325.1.7.0325 → 325.1 → 325.1.7
20De6kqdD9D:3-165,D:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
21De6kqdD10D:208-215,D:341-389325.1.7.0325 → 325.1 → 325.1.7
22De6kqdD11D:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
23De6kqdD12D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
24Ee6kqdE1E:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe6kqdF1F:318-423Sigma70_r4101 → 101.1 → 101.1.1
26Fe6kqdF2F:258-317Sigma70_r3101 → 101.1 → 101.1.1
27Fe6kqdF3F:78-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
28Ke6kqdK1K:4-49,K:173-229RNA_pol_L305 → 305.1 → 305.1.1
29Ke6kqdK2K:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
30Le6kqdL1L:4-49,L:173-228RNA_pol_L305 → 305.1 → 305.1.1
31Le6kqdL2L:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
32Me6kqdM1M:592-663325.1.7.0325 → 325.1 → 325.1.7
33Me6kqdM2M:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
34Me6kqdM3M:457-5914042.1.1.04042 → 4042.1 → 4042.1.1
35Me6kqdM4M:1-141,M:331-456RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
36Me6kqdM5M:664-700,M:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
37Me6kqdM6M:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
38Me6kqdM7M:999-1118RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
39Ne6kqdN1N:610-653,N:697-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
40Ne6kqdN2N:1201-1269,N:1331-1502RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
41Ne6kqdN3N:654-6964951.1.1.04951 → 4951.1 → 4951.1.1
42Ne6kqdN4N:1270-1330325.1.7.0325 → 325.1 → 325.1.7
43Ne6kqdN5N:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
44Ne6kqdN6N:1110-1200275.1.1.0275 → 275.1 → 275.1.1
45Ne6kqdN7N:208-215,N:341-389325.1.7.0325 → 325.1 → 325.1.7
46Ne6kqdN8N:166-207,N:390-395325.1.7.0325 → 325.1 → 325.1.7
47Ne6kqdN9N:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
48Ne6kqdN10N:3-165,N:449-6094246.1.1.04246 → 4246.1 → 4246.1.1
49Ne6kqdN11N:216-340RPOC_hybrid325 → 325.1 → 325.1.6
50Ne6kqdN12N:396-448325.1.7.0325 → 325.1 → 325.1.7
51Oe6kqdO1O:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2
52Pe6kqdP1P:77-257Sigma70_r1_2,Sigma70_r2142 → 142.1 → 142.1.1
53Pe6kqdP2P:318-423Sigma70_r4101 → 101.1 → 101.1.1
54Pe6kqdP3P:258-317Sigma70_r3101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors