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PDB 6LQU

ELECTRON MICROSCOPY0 chains90 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (90)

#ChainDomain IDRangeFamilyClassification
13Be6lqu3B13B:82-326Fibrillarin2003 → 2003.1 → 2003.1.5
23Ce6lqu3C13C:86-322Fibrillarin2003 → 2003.1 → 2003.1.5
33De6lqu3D13D:168-298Nop606 → 606.1 → 606.1.1
43De6lqu3D23D:288-329,3D:370-415Nop102 → 102.1 → 102.1.4
53De6lqu3D33D:3-167NOP5NT3407 → 3407.1 → 3407.1.1
63Ee6lqu3E13E:3-18,3E:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
73Ee6lqu3E23E:285-403Nop102 → 102.1 → 102.1.4
83Ee6lqu3E33E:155-284Nop606 → 606.1 → 606.1.1
93Fe6lqu3F13F:58-77,3F:129-570WD405 → 5.1 → 5.1.4
103Ge6lqu3G13G:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
113He6lqu3H13H:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
125Ce6lqu5C15C:58-473WD40,BING4CT5 → 5.1 → 5.1.5
135Fe6lqu5F15F:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
145Ge6lqu5G15G:84-267Brix7502 → 7502.1 → 7502.1.1
155Ie6lqu5I15I:65-379WD40, Beta-prop_NUP159_NUP2145 → 5.1 → 5.1.4
165Ke6lqu5K15K:57-182Fcf12006 → 2006.1 → 2006.1.4
17A4e6lquA41A4:29-374WD405 → 5.1 → 5.1.4
18A4e6lquA42A4:375-681,A4:731-7765.1.4.05 → 5.1 → 5.1.4
19A5e6lquA51A5:434-557Utp12109 → 109.54 → 109.54.1
20A5e6lquA52A5:3-3725.1.5.05 → 5.1 → 5.1.5
21A9e6lquA91A9:389-516109.54.1.0109 → 109.54 → 109.54.1
22AEe6lquAE1AE:3-421U3snoRNP10109 → 109.4 → 109.4.1
23AFe6lquAF1AF:34-364WD405 → 5.1 → 5.1.5
24AFe6lquAF2AF:2-33,AF:388-512UTP15_C109 → 109.54 → 109.54.1
25B1e6lquB11B1:735-856Utp12109 → 109.54 → 109.54.1
26B1e6lquB12B1:343-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
27B1e6lquB13B1:2-223,B1:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
28B2e6lquB21B2:745-921Utp12109 → 109.54 → 109.54.1
29B2e6lquB22B2:5-385WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
30B2e6lquB23B2:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
31B3e6lquB31B3:332-649WD40, Beta-prop_WDR75_2nd5 → 5.1 → 5.1.4
32B3e6lquB32B3:7-331WD405 → 5.1 → 5.1.4
33B3e6lquB33B3:650-817Utp13109 → 109.54 → 109.54.1
34B6e6lquB61B6:1-196U3_assoc_6, HAT_PRP39_N109 → 109.4 → 109.4.1
35B8e6lquB81B8:235-591WD405 → 5.1 → 5.1.4
36BEe6lquBE1BE:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
37BEe6lquBE2BE:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
38RAe6lquRA1RA:2-21,RA:41-360Beta-prop_NOL10_N5 → 5.1 → 5.1.5
39RCe6lquRC1RC:38-119KH_8327 → 327.11 → 327.11.2
40RCe6lquRC2RC:120-212KRR1-like_KH2327 → 327.11 → 327.11.2
41RDe6lquRD1RD:1457-1721HAT_PRP39_N109 → 109.4 → 109.4.1
42REe6lquRE1RE:515-698Nrap_D3304 → 304.20 → 304.20.1
43REe6lquRE2RE:1092-1237Nrap_D6304 → 304.20 → 304.20.1
44REe6lquRE3RE:100-356Nrap316 → 316.1 → 316.1.1
45REe6lquRE4RE:357-514Nrap_D2102 → 102.1 → 102.1.3
46REe6lquRE5RE:699-905Nrap_D4316 → 316.1 → 316.1.1
47REe6lquRE6RE:906-983,RE:1010-1091Nrap_D5102 → 102.1 → 102.1.3
48RFe6lquRF1RF:3-189RRM_Rrp7304 → 304.9 → 304.9.1
49RGe6lquRG1RG:29-251EMG12488 → 2488.1 → 2488.1.1
50RHe6lquRH1RH:16-251EMG12488 → 2488.1 → 2488.1.1
51RIe6lquRI1RI:6-63,RI:179-257Ribosomal_L1898 → 898.1 → 898.1.1
52RIe6lquRI2RI:64-178Ribosomal_L12007 → 2007.25 → 2007.25.1
53RJe6lquRJ1RJ:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
54RJe6lquRJ2RJ:929-1016RIBIOP_C1 → 1.1 → 1.1.7
55RJe6lquRJ3RJ:818-928RIBIOP_C1 → 1.1 → 1.1.8
56RJe6lquRJ4RJ:236-305,RJ:614-636,RJ:787-817AARP2CN1 → 1.1 → 1.1.7
57RKe6lquRK1RK:7-182,RK:287-366RTC328 → 328.6 → 328.6.1
58RKe6lquRK2RK:183-287RTC_insert2485 → 2485.2 → 2485.2.1
59RLe6lquRL1RL:498-661,RL:708-834GNAT_acetyltr_2213 → 213.1 → 213.1.1
60RLe6lquRL2RL:211-433,RL:464-497Helicase_RecD2004 → 2004.1 → 2004.1.1
61RLe6lquRL3RL:3-210TmcA_N2004 → 2004.1 → 2004.1.1
62RLe6lquRL4RL:835-932tRNA_bind_2101 → 101.1 → 101.1.1
63RMe6lquRM1RM:498-661,RM:708-834GNAT_acetyltr_2213 → 213.1 → 213.1.1
64RMe6lquRM2RM:211-433,RM:467-497Helicase_RecD2004 → 2004.1 → 2004.1.1
65RMe6lquRM3RM:3-66,RM:92-210TmcA_N2004 → 2004.1 → 2004.1.1
66RMe6lquRM4RM:835-932tRNA_bind_2101 → 101.1 → 101.1.1
67RSe6lquRS1RS:209-465Bystin109 → 109.4 → 109.4.1
68RTe6lquRT1RT:95-177KH_8327 → 327.11 → 327.11.2
69RTe6lquRT2RT:178-274KH_PNO1_2nd327 → 327.11 → 327.11.2
70Sde6lquSd1Sd:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
71SFe6lquSF1SF:13-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
72SFe6lquSF2SF:176-241KOW,40S_S4_C4 → 4.1 → 4.1.1
73SFe6lquSF3SF:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
74SGe6lquSG1SG:13-225Ribosomal_S7167 → 167.1 → 167.1.1
75SHe6lquSH1SH:1-143,SH:183-219Ribosomal_S6e239 → 239.1 → 239.1.1
76SIe6lquSI1SI:6-96,SI:116-117Ribosomal_S7e327 → 327.18 → 327.18.1
77SIe6lquSI2SI:118-189Ribosomal_S7e327 → 327.18 → 327.18.1
78SJe6lquSJ1SJ:2-121,SJ:151-196Ribosomal_S8e3174 → 3174.1 → 3174.1.1
79SKe6lquSK1SK:12-182Ribosomal_S4,S4221 → 221.1 → 221.1.2
80SMe6lquSM1SM:8-143Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
81SNe6lquSN1SN:25-143Ribosomal_L7Ae301 → 301.1 → 301.1.1
82SOe6lquSO1SO:9-82Ribosomal_S13_N101 → 101.40 → 101.40.1
83SOe6lquSO2SO:83-142Ribosomal_S15616 → 616.1 → 616.1.1
84SPe6lquSP1SP:11-128Ribosomal_S112484 → 2484.1 → 2484.1.1
85SRe6lquSR1SR:3-127Ribosomal_S9212 → 212.1 → 212.1.1
86STe6lquST1ST:2-129Ribosomal_S13102 → 102.2 → 102.2.1
87SXe6lquSX1SX:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
88SXe6lquSX2SX:4-67Ribosomal_S8320 → 320.2 → 320.2.1
89SYe6lquSY1SY:42-144Ribosom_S12_S232 → 2.1 → 2.1.1
90SZe6lquSZ1SZ:4-105Ribosomal_S24e304 → 304.109 → 304.109.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors