PDB 6NDK
X-RAY DIFFRACTION3.64 Å0 chains110 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain QBview chain
1 domainChain QCview chain
2 domainsChain QDview chain
1 domainChain QEview chain
2 domainsChain QFview chain
1 domainChain QGview chain
1 domainChain QHview chain
2 domainsChain QIview chain
1 domainChain QJview chain
1 domainChain QKview chain
1 domainChain QLview chain
1 domainChain QMview chain
1 domainChain QNview chain
1 domainChain QOview chain
1 domainChain QPview chain
1 domainChain QQview chain
1 domainChain QRview chain
1 domainChain QSview chain
1 domainChain QTview chain
1 domainChain R0view chain
1 domainChain R1view chain
1 domainChain R2view chain
1 domainChain R3view chain
1 domainChain R4view chain
1 domainChain R5view chain
1 domainChain R6view chain
1 domainChain R7view chain
1 domainChain R8view chain
1 domainChain R9view chain
1 domainChain RDview chain
2 domainsChain REview chain
1 domainChain RFview chain
1 domainChain RGview chain
1 domainChain RHview chain
2 domainsChain RIview chain
2 domainsChain RNview chain
1 domainChain ROview chain
1 domainChain RPview chain
1 domainChain RQview chain
1 domainChain RRview chain
1 domainChain RSview chain
1 domainChain RTview chain
1 domainChain RUview chain
1 domainChain RVview chain
1 domainChain RWview chain
1 domainChain RXview chain
1 domainChain RYview chain
1 domainChain RZview chain
2 domainsChain XBview chain
1 domainChain XCview chain
2 domainsChain XDview chain
1 domainChain XEview chain
2 domainsChain XFview chain
1 domainChain XGview chain
1 domainChain XHview chain
2 domainsChain XIview chain
1 domainChain XJview chain
1 domainChain XKview chain
1 domainChain XLview chain
1 domainChain XMview chain
1 domainChain XNview chain
1 domainChain XOview chain
1 domainChain XPview chain
1 domainChain XQview chain
1 domainChain XRview chain
1 domainChain XSview chain
1 domainChain XTview chain
1 domainChain Y0view chain
1 domainChain Y1view chain
1 domainChain Y2view chain
1 domainChain Y3view chain
1 domainChain Y4view chain
1 domainChain Y5view chain
1 domainChain Y6view chain
1 domainChain Y7view chain
1 domainChain Y8view chain
1 domainChain Y9view chain
1 domainChain YDview chain
2 domainsChain YEview chain
1 domainChain YFview chain
1 domainChain YGview chain
1 domainChain YHview chain
2 domainsChain YIview chain
2 domainsChain YNview chain
1 domainChain YOview chain
1 domainChain YPview chain
1 domainChain YQview chain
1 domainChain YRview chain
1 domainChain YSview chain
1 domainChain YTview chain
1 domainChain YUview chain
1 domainChain YVview chain
1 domainChain YWview chain
1 domainChain YXview chain
1 domainChain YYview chain
1 domainChain YZview chain
2 domainsAll Domains (110)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | QB | e6ndkQB1 | QB:6-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 2 | QC | e6ndkQC1 | QC:107-206 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 3 | QC | e6ndkQC2 | QC:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 4 | QD | e6ndkQD1 | QD:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 5 | QE | e6ndkQE1 | QE:74-152 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 6 | QE | e6ndkQE2 | QE:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 7 | QF | e6ndkQF1 | QF:1-100 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 8 | QG | e6ndkQG1 | QG:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 9 | QH | e6ndkQH1 | QH:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 10 | QH | e6ndkQH2 | QH:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 11 | QI | e6ndkQI1 | QI:2-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 12 | QJ | e6ndkQJ1 | QJ:3-101 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 13 | QK | e6ndkQK1 | QK:13-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 14 | QL | e6ndkQL1 | QL:5-126 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 15 | QM | e6ndkQM1 | QM:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 16 | QN | e6ndkQN1 | QN:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 17 | QO | e6ndkQO1 | QO:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 18 | QP | e6ndkQP1 | QP:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 19 | e6ndkQQ1 | QQ:2-100 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 | |
| 20 | QR | e6ndkQR1 | QR:20-87 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 21 | QS | e6ndkQS1 | QS:2-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 22 | QT | e6ndkQT1 | QT:8-103 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 23 | R0 | e6ndkR01 | R0:8-84 | 325.1.8.0 | 325 → 325.1 → 325.1.8 |
| 24 | R1 | e6ndkR11 | R1:2-98 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 25 | R2 | e6ndkR21 | R2:1-70 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 26 | R3 | e6ndkR31 | R3:2-60 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 27 | R4 | e6ndkR41 | R4:1-69 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 28 | R5 | e6ndkR51 | R5:2-60 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 29 | R6 | e6ndkR61 | R6:2-54 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 30 | R7 | e6ndkR71 | R7:1-48 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 31 | R8 | e6ndkR81 | R8:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 32 | R9 | e6ndkR91 | R9:1-37 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 33 | RD | e6ndkRD1 | RD:127-276 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 34 | RD | e6ndkRD2 | RD:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 35 | RE | e6ndkRE1 | RE:1-204 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 36 | RF | e6ndkRF1 | RF:6-207 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 37 | RG | e6ndkRG1 | RG:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 38 | RH | e6ndkRH1 | RH:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 39 | RH | e6ndkRH2 | RH:83-175 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 40 | RI | e6ndkRI1 | RI:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 41 | RI | e6ndkRI2 | RI:56-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 42 | RN | e6ndkRN1 | RN:1-140 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 43 | RO | e6ndkRO1 | RO:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 44 | RP | e6ndkRP1 | RP:1-149 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 45 | RQ | e6ndkRQ1 | RQ:1-141 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 46 | RR | e6ndkRR1 | RR:1-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 47 | RS | e6ndkRS1 | RS:3-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 48 | RT | e6ndkRT1 | RT:1-131 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 49 | RU | e6ndkRU1 | RU:2-117 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 50 | RV | e6ndkRV1 | RV:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 51 | RW | e6ndkRW1 | RW:1-112 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 52 | RX | e6ndkRX1 | RX:1-95 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 53 | RY | e6ndkRY1 | RY:1-107 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 54 | RZ | e6ndkRZ1 | RZ:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 55 | RZ | e6ndkRZ2 | RZ:93-196 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 56 | XB | e6ndkXB1 | XB:5-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 57 | XC | e6ndkXC1 | XC:107-206 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 58 | XC | e6ndkXC2 | XC:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 59 | XD | e6ndkXD1 | XD:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 60 | XE | e6ndkXE1 | XE:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 61 | XE | e6ndkXE2 | XE:74-152 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 62 | XF | e6ndkXF1 | XF:1-100 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 63 | XG | e6ndkXG1 | XG:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 64 | XH | e6ndkXH1 | XH:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 65 | XH | e6ndkXH2 | XH:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 66 | XI | e6ndkXI1 | XI:2-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 67 | XJ | e6ndkXJ1 | XJ:5-100 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 68 | XK | e6ndkXK1 | XK:13-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 69 | XL | e6ndkXL1 | XL:5-126 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 70 | XM | e6ndkXM1 | XM:3-116 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 71 | XN | e6ndkXN1 | XN:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 72 | XO | e6ndkXO1 | XO:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 73 | XP | e6ndkXP1 | XP:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 74 | XQ | e6ndkXQ1 | XQ:2-100 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 75 | XR | e6ndkXR1 | XR:20-87 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 76 | XS | e6ndkXS1 | XS:2-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 77 | XT | e6ndkXT1 | XT:6-103 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 78 | Y0 | e6ndkY01 | Y0:8-84 | 325.1.8.0 | 325 → 325.1 → 325.1.8 |
| 79 | Y1 | e6ndkY11 | Y1:2-98 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 80 | Y2 | e6ndkY21 | Y2:1-70 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 81 | Y3 | e6ndkY31 | Y3:2-60 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 82 | Y4 | e6ndkY41 | Y4:1-69 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 83 | Y5 | e6ndkY51 | Y5:2-59 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 84 | Y6 | e6ndkY61 | Y6:2-54 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 85 | Y7 | e6ndkY71 | Y7:1-48 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 86 | Y8 | e6ndkY81 | Y8:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 87 | Y9 | e6ndkY91 | Y9:1-37 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 88 | YD | e6ndkYD1 | YD:127-276 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 89 | YD | e6ndkYD2 | YD:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 90 | YE | e6ndkYE1 | YE:1-204 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 91 | YF | e6ndkYF1 | YF:6-207 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 92 | YG | e6ndkYG1 | YG:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 93 | YH | e6ndkYH1 | YH:83-175 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 94 | YH | e6ndkYH2 | YH:3-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 95 | YI | e6ndkYI1 | YI:56-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 96 | YI | e6ndkYI2 | YI:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 97 | YN | e6ndkYN1 | YN:1-140 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 98 | YO | e6ndkYO1 | YO:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 99 | YP | e6ndkYP1 | YP:1-149 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 100 | YQ | e6ndkYQ1 | YQ:1-141 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 101 | YR | e6ndkYR1 | YR:1-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 102 | YS | e6ndkYS1 | YS:3-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 103 | YT | e6ndkYT1 | YT:1-131 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 104 | YU | e6ndkYU1 | YU:2-117 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 105 | YV | e6ndkYV1 | YV:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 106 | YW | e6ndkYW1 | YW:1-112 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 107 | YX | e6ndkYX1 | YX:1-95 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 108 | YY | e6ndkYY1 | YY:1-107 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 109 | YZ | e6ndkYZ1 | YZ:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 110 | YZ | e6ndkYZ2 | YZ:93-183 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors