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PDB 6NDK

X-RAY DIFFRACTION3.64 Å0 chains110 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (110)

#ChainDomain IDRangeFamilyClassification
1QBe6ndkQB1QB:6-240Ribosomal_S22007 → 2007.6 → 2007.6.1
2QCe6ndkQC1QC:107-206Ribosomal_S3_C230 → 230.2 → 230.2.1
3QCe6ndkQC2QC:2-106KH_2327 → 327.11 → 327.11.1
4QDe6ndkQD1QD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
5QEe6ndkQE1QE:74-152Ribosomal_S5_C212 → 212.1 → 212.1.1
6QEe6ndkQE2QE:5-73Ribosomal_S5330 → 330.1 → 330.1.1
7QFe6ndkQF1QF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
8QGe6ndkQG1QG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
9QHe6ndkQH1QH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
10QHe6ndkQH2QH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
11QIe6ndkQI1QI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
12QJe6ndkQJ1QJ:3-101Ribosomal_S10304 → 304.44 → 304.44.1
13QKe6ndkQK1QK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
14QLe6ndkQL1QL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
15QMe6ndkQM1QM:2-117Ribosomal_S13102 → 102.2 → 102.2.1
16QNe6ndkQN1QN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
17QOe6ndkQO1QO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18QPe6ndkQP1QP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
19QQe6ndkQQ1QQ:2-100Ribosomal_S172 → 2.1 → 2.1.1
20QRe6ndkQR1QR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
21QSe6ndkQS1QS:2-84Ribosomal_S19838 → 838.1 → 838.1.1
22QTe6ndkQT1QT:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
23R0e6ndkR01R0:8-84325.1.8.0325 → 325.1 → 325.1.8
24R1e6ndkR11R1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
25R2e6ndkR21R2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
26R3e6ndkR31R3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
27R4e6ndkR41R4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
28R5e6ndkR51R5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
29R6e6ndkR61R6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
30R7e6ndkR71R7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
31R8e6ndkR81R8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
32R9e6ndkR91R9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
33RDe6ndkRD1RD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
34RDe6ndkRD2RD:2-126Ribosomal_L22 → 2.1 → 2.1.1
35REe6ndkRE1RE:1-204Ribosomal_L31 → 1.1 → 1.1.7
36RFe6ndkRF1RF:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
37RGe6ndkRG1RG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
38RHe6ndkRH1RH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
39RHe6ndkRH2RH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
40RIe6ndkRI1RI:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
41RIe6ndkRI2RI:56-146Ribosomal_L9_C523 → 523.1 → 523.1.1
42RNe6ndkRN1RN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
43ROe6ndkRO1RO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
44RPe6ndkRP1RP:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
45RQe6ndkRQ1RQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
46RRe6ndkRR1RR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
47RSe6ndkRS1RS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
48RTe6ndkRT1RT:1-131Ribosomal_L194 → 4.1 → 4.1.1
49RUe6ndkRU1RU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
50RVe6ndkRV1RV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
51RWe6ndkRW1RW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
52RXe6ndkRX1RX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
53RYe6ndkRY1RY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
54RZe6ndkRZ1RZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
55RZe6ndkRZ2RZ:93-196Ribosomal_TL5_C240 → 240.1 → 240.1.1
56XBe6ndkXB1XB:5-240Ribosomal_S22007 → 2007.6 → 2007.6.1
57XCe6ndkXC1XC:107-206Ribosomal_S3_C230 → 230.2 → 230.2.1
58XCe6ndkXC2XC:2-106KH_2327 → 327.11 → 327.11.1
59XDe6ndkXD1XD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
60XEe6ndkXE1XE:5-73Ribosomal_S5330 → 330.1 → 330.1.1
61XEe6ndkXE2XE:74-152Ribosomal_S5_C212 → 212.1 → 212.1.1
62XFe6ndkXF1XF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
63XGe6ndkXG1XG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
64XHe6ndkXH1XH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
65XHe6ndkXH2XH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
66XIe6ndkXI1XI:2-127Ribosomal_S9212 → 212.1 → 212.1.1
67XJe6ndkXJ1XJ:5-100Ribosomal_S10304 → 304.44 → 304.44.1
68XKe6ndkXK1XK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
69XLe6ndkXL1XL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
70XMe6ndkXM1XM:3-116Ribosomal_S13102 → 102.2 → 102.2.1
71XNe6ndkXN1XN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
72XOe6ndkXO1XO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
73XPe6ndkXP1XP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
74XQe6ndkXQ1XQ:2-100Ribosomal_S172 → 2.1 → 2.1.1
75XRe6ndkXR1XR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
76XSe6ndkXS1XS:2-84Ribosomal_S19838 → 838.1 → 838.1.1
77XTe6ndkXT1XT:6-103Ribosomal_S20p604 → 604.9 → 604.9.1
78Y0e6ndkY01Y0:8-84325.1.8.0325 → 325.1 → 325.1.8
79Y1e6ndkY11Y1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
80Y2e6ndkY21Y2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
81Y3e6ndkY31Y3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
82Y4e6ndkY41Y4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
83Y5e6ndkY51Y5:2-59Ribosomal_L32p375 → 375.1 → 375.1.1
84Y6e6ndkY61Y6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
85Y7e6ndkY71Y7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
86Y8e6ndkY81Y8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
87Y9e6ndkY91Y9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
88YDe6ndkYD1YD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
89YDe6ndkYD2YD:2-126Ribosomal_L22 → 2.1 → 2.1.1
90YEe6ndkYE1YE:1-204Ribosomal_L31 → 1.1 → 1.1.7
91YFe6ndkYF1YF:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
92YGe6ndkYG1YG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
93YHe6ndkYH1YH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
94YHe6ndkYH2YH:3-82Ribosomal_L6318 → 318.1 → 318.1.1
95YIe6ndkYI1YI:56-146Ribosomal_L9_C523 → 523.1 → 523.1.1
96YIe6ndkYI2YI:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
97YNe6ndkYN1YN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
98YOe6ndkYO1YO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
99YPe6ndkYP1YP:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
100YQe6ndkYQ1YQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
101YRe6ndkYR1YR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
102YSe6ndkYS1YS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
103YTe6ndkYT1YT:1-131Ribosomal_L194 → 4.1 → 4.1.1
104YUe6ndkYU1YU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
105YVe6ndkYV1YV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
106YWe6ndkYW1YW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
107YXe6ndkYX1YX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
108YYe6ndkYY1YY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
109YZe6ndkYZ1YZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
110YZe6ndkYZ2YZ:93-183Ribosomal_TL5_C240 → 240.1 → 240.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors