ECODEvolutionary Classification of Protein Domains

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PDB 6RID

ELECTRON MICROSCOPY0 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

4 domains

e6ridA1(A:1-275,A:351-352,A:361-362)e6ridA2(A:276-350,A:353-360,A:363-458)e6ridA3(A:459-579)e6ridA4(A:580-774)

Chain Bview chain

7 domains

e6ridB1(B:30-172,B:357-490)e6ridB2(B:733-769,B:878-1022)e6ridB3(B:1021-1162)e6ridB4(B:585-732)e6ridB5(B:173-357)e6ridB6(B:770-879)e6ridB7(B:491-584)

Chain Jview chain

1 domain

e6ridJ1(J:2-62)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6ridA1	A:1-275,A:351-352,A:361-362	RNA_pol_Rpb1_1	4246 → 4246.1 → 4246.1.1
2	A	e6ridA2	A:276-350,A:353-360,A:363-458	RNA_pol_Rpb1_2	1 → 1.1 → 1.1.2
3	A	e6ridA3	A:459-579	RNA_pol_Rpb1_3	4959 → 4959.1 → 4959.1.1
4	A	e6ridA4	A:580-774	RNA_pol_Rpb1_4	4958 → 4958.1 → 4958.1.1
5	B	e6ridB1	B:30-172,B:357-490	RNA_pol_Rpb2_3	4010 → 4010.1 → 4010.1.1
6	B	e6ridB2	B:733-769,B:878-1022	RNA_pol_Rpb2_6	1 → 1.1 → 1.1.2
7	B	e6ridB3	B:1021-1162	RNA_pol_Rpb2_7	4043 → 4043.1 → 4043.1.1
8	B	e6ridB4	B:585-732	RNA_pol_Rpb2_5	4042 → 4042.1 → 4042.1.1
9	B	e6ridB5	B:173-357	rpo132	4041 → 4041.1 → 4041.1.1
10	B	e6ridB6	B:770-879	RNA_pol_Rpb2_6	325 → 325.1 → 325.1.7
11	B	e6ridB7	B:491-584	4961.1.1.0	4961 → 4961.1 → 4961.1.1
12	J	e6ridJ1	J:2-62	Chordopox_RPO7	101 → 101.4 → 101.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors