PDB 6RXV
ELECTRON MICROSCOPY0 chains89 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Caview chain
2 domainsChain CAview chain
1 domainChain Cbview chain
3 domainsChain CBview chain
1 domainChain Ccview chain
1 domainChain Cdview chain
1 domainChain CDview chain
3 domainsChain Ceview chain
2 domainsChain CEview chain
1 domainChain Cfview chain
1 domainChain CFview chain
1 domainChain Cgview chain
1 domainChain Chview chain
1 domainChain CHview chain
2 domainsChain Ciview chain
1 domainChain CIview chain
5 domainsChain Cjview chain
1 domainChain CJview chain
1 domainChain Ckview chain
1 domainChain CKview chain
1 domainChain Clview chain
1 domainChain Cmview chain
2 domainsChain CMview chain
2 domainsChain Cnview chain
1 domainChain CNview chain
1 domainChain Coview chain
1 domainChain COview chain
1 domainChain Cpview chain
1 domainChain CPview chain
2 domainsChain CQview chain
2 domainsChain CRview chain
4 domainsChain CSview chain
4 domainsChain CVview chain
1 domainChain CWview chain
1 domainChain CXview chain
1 domainChain UAview chain
3 domainsChain UEview chain
1 domainChain UFview chain
1 domainChain UGview chain
1 domainChain UIview chain
1 domainChain UJview chain
1 domainChain ULview chain
1 domainChain UOview chain
1 domainChain UQview chain
1 domainChain UTview chain
1 domainChain UUview chain
3 domainsChain UVview chain
6 domainsChain UXview chain
1 domainChain UZview chain
2 domainsAll Domains (89)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | Ca | e6rxvCa1 | Ca:114-232 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 2 | Ca | e6rxvCa2 | Ca:8-113 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 3 | CA | e6rxvCA1 | CA:64-313 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 4 | Cb | e6rxvCb1 | Cb:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 5 | Cb | e6rxvCb2 | Cb:176-239 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 6 | Cb | e6rxvCb3 | Cb:8-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 7 | CB | e6rxvCB1 | CB:72-308 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 8 | Cc | e6rxvCc1 | Cc:13-212 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 9 | CC | e6rxvCC1 | CC:171-301 | Nop | 606 → 606.1 → 606.1.1 |
| 10 | CC | e6rxvCC2 | CC:3-170 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 11 | CC | e6rxvCC3 | CC:291-331,CC:372-421 | Nop | 102 → 102.1 → 102.1.4 |
| 12 | Cd | e6rxvCd1 | Cd:1-226 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 13 | CD | e6rxvCD1 | CD:1-177 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 14 | CD | e6rxvCD2 | CD:178-307 | Nop | 102 → 102.1 → 102.1.4 |
| 15 | CD | e6rxvCD3 | CD:308-410 | Nop | 102 → 102.1 → 102.1.4 |
| 16 | Ce | e6rxvCe1 | Ce:128-197 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 17 | Ce | e6rxvCe2 | Ce:15-103 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 18 | CE | e6rxvCE1 | CE:6-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 19 | Cf | e6rxvCf1 | Cf:2-123,Cf:151-202 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 20 | CF | e6rxvCF1 | CF:7-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 21 | Cg | e6rxvCg1 | Cg:18-176 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 22 | CG | e6rxvCG1 | CG:152-201,CG:234-369,CG:394-439,CG:460-505,CG:556-608 | WD40 | 5 → 5.1 → 5.1.4 |
| 23 | Ch | e6rxvCh1 | Ch:86-151 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 24 | CH | e6rxvCH1 | CH:209-325 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 25 | CH | e6rxvCH2 | CH:7-208,CH:325-411 | RTC | 328 → 328.6 → 328.6.1 |
| 26 | Ci | e6rxvCi1 | Ci:25-139 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 27 | CI | e6rxvCI1 | CI:54-236 | MMR_HSR1 | 2004 → 2004.1 → 2004.1.1 |
| 28 | CI | e6rxvCI2 | CI:237-303,CI:772-805 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 29 | CI | e6rxvCI3 | CI:806-917 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 30 | CI | e6rxvCI4 | CI:918-956 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 31 | CI | e6rxvCI5 | CI:957-992 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 32 | Cj | e6rxvCj1 | Cj:3-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 33 | CJ | e6rxvCJ1 | CJ:2-180 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 34 | Ck | e6rxvCk1 | Ck:11-161 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 35 | CK | e6rxvCK1 | CK:83-274 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 36 | Cl | e6rxvCl1 | Cl:2-81 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 37 | Cm | e6rxvCm1 | Cm:2-67 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 38 | Cm | e6rxvCm2 | Cm:68-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 39 | CM | e6rxvCM1 | CM:81-315 | WD40 | 5 → 5.1 → 5.1.5 |
| 40 | CM | e6rxvCM2 | CM:316-357 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 41 | Cn | e6rxvCn1 | Cn:43-144 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 42 | CN | e6rxvCN1 | CN:12-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 43 | Co | e6rxvCo1 | Co:336-427 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
| 44 | CO | e6rxvCO1 | CO:24-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 45 | Cp | e6rxvCp1 | Cp:6-66 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 46 | CP | e6rxvCP1 | CP:118-209 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 47 | CP | e6rxvCP2 | CP:36-117 | KH_8 | 327 → 327.11 → 327.11.2 |
| 48 | CQ | e6rxvCQ1 | CQ:162-259 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 49 | CQ | e6rxvCQ2 | CQ:80-161 | 327.11.2.0 | 327 → 327.11 → 327.11.2 |
| 50 | CR | e6rxvCR1 | CR:503-663,CR:703-833 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 51 | CR | e6rxvCR2 | CR:2-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 52 | CR | e6rxvCR3 | CR:212-223,CR:249-326,CR:365-434,CR:469-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 53 | CR | e6rxvCR4 | CR:834-924 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 54 | CS | e6rxvCS1 | CS:503-663,CS:703-833 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 55 | CS | e6rxvCS2 | CS:2-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 56 | CS | e6rxvCS3 | CS:212-223,CS:249-326,CS:365-434,CS:469-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 57 | CS | e6rxvCS4 | CS:834-924 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 58 | CV | e6rxvCV1 | CV:30-103,CV:145-218 | RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 59 | CW | e6rxvCW1 | CW:2-383 | Beta-prop_NOL10_N | 5 → 5.1 → 5.1.5 |
| 60 | CX | e6rxvCX1 | CX:193-459 | Bystin | 109 → 109.4 → 109.4.1 |
| 61 | UA | e6rxvUA1 | UA:730-847 | Utp12 | 109 → 109.54 → 109.54.1 |
| 62 | UA | e6rxvUA2 | UA:338-729 | WD40 | 5 → 5.1 → 5.1.4 |
| 63 | UA | e6rxvUA3 | UA:1-338 | WD40 | 5 → 5.1 → 5.1.4 |
| 64 | UD | e6rxvUD1 | UD:368-578,UD:610-775,UD:797-884 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 65 | UD | e6rxvUD2 | UD:1-367 | WD40 | 5 → 5.1 → 5.1.4 |
| 66 | UE | e6rxvUE1 | UE:153-280 | Utp12 | 109 → 109.54 → 109.54.1 |
| 67 | UF | e6rxvUF1 | UF:2-196,UF:272-409 | U3_assoc_6, HAT_Syf1_CNRKL1_N | 109 → 109.4 → 109.4.1 |
| 68 | UG | e6rxvUG1 | UG:153-464 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 69 | UI | e6rxvUI1 | UI:153-280 | Utp12 | 109 → 109.54 → 109.54.1 |
| 70 | UJ | e6rxvUJ1 | UJ:1643-1801 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 71 | UL | e6rxvUL1 | UL:777-931 | Utp12 | 109 → 109.54 → 109.54.1 |
| 72 | UM | e6rxvUM1 | UM:723-894 | Utp13 | 109 → 109.54 → 109.54.1 |
| 73 | UM | e6rxvUM2 | UM:365-722 | WD40 | 5 → 5.1 → 5.1.4 |
| 74 | UM | e6rxvUM3 | UM:11-165,UM:197-350 | WD40 | 5 → 5.1 → 5.1.4 |
| 75 | UO | e6rxvUO1 | UO:42-350 | WD40 | 5 → 5.1 → 5.1.5 |
| 76 | UQ | e6rxvUQ1 | UQ:93-266,UQ:288-435,UQ:919-952 | Beta-prop_WDR75_1st | 5 → 5.1 → 5.1.5 |
| 77 | UT | e6rxvUT1 | UT:1294-1522,UT:1571-1656,UT:1684-1827,UT:1849-1924,UT:1946-2228 | 109.4.1.92 | 109 → 109.4 → 109.4.1 |
| 78 | UU | e6rxvUU1 | UU:844-867,UU:923-1049 | Utp21 | 109 → 109.54 → 109.54.1 |
| 79 | UU | e6rxvUU2 | UU:386-582,UU:614-793,UU:840-843 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 80 | UU | e6rxvUU3 | UU:31-385 | Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 81 | UV | e6rxvUV1 | UV:439-618 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 82 | UV | e6rxvUV2 | UV:987-1111 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 83 | UV | e6rxvUV3 | UV:619-823 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 84 | UV | e6rxvUV4 | UV:34-293 | Nrap | 316 → 316.1 → 316.1.1 |
| 85 | UV | e6rxvUV5 | UV:294-438 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 86 | UV | e6rxvUV6 | UV:824-986 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 87 | UX | e6rxvUX1 | UX:100-178 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 88 | UZ | e6rxvUZ1 | UZ:18-36,UZ:58-88,UZ:232-295 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
| 89 | UZ | e6rxvUZ2 | UZ:89-186 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors