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PDB 6VMI

ELECTRON MICROSCOPY0 chains95 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (95)

#ChainDomain IDRangeFamilyClassification
10e6vmi010:79-186Ribosomal_L32p375 → 375.1 → 375.1.1
21e6vmi111:14-65Ribosomal_L33375 → 375.1 → 375.1.1
32e6vmi212:47-92Ribosomal_L343074 → 3074.1 → 3074.1.1
43e6vmi313:94-162Ribosomal_L35p4281 → 4281.1 → 4281.1.1
54e6vmi414:66-103Ribosomal_L36919 → 919.1 → 919.1.1
65e6vmi515:30-423PDCD92008 → 2008.1 → 2008.1.1
76e6vmi616:27-380PBP11 → 11.1 → 11.1.7
87e6vmi717:32-68,7:139-328309.1.2.0309 → 309.1 → 309.1.2
97e6vmi727:69-138TGS221 → 221.1 → 221.1.1
108e6vmi818:83-181MRP-L283864 → 3864.1 → 3864.1.1
119e6vmi919:14-137MRP-L273865 → 3865.1 → 3865.1.1
12ae6vmia1a:35-142MRP-S323905 → 3905.1 → 3905.1.1
13A0e6vmiA01A0:2-215MRP-S344 → 4.27 → 4.27.1
14A1e6vmiA11A1:49-323MRP-S28330 → 330.3 → 330.3.1
15A2e6vmiA21A2:2-117CHCH568 → 568.1 → 568.1.1
16A3e6vmiA31A3:128-199COX24_C3970 → 3970.1 → 3970.1.1
17A4e6vmiA41A4:244-376PPR_2, PPR_3, PPR_long109 → 109.4 → 109.4.1
18A4e6vmiA42A4:442-639109.4.1.0109 → 109.4 → 109.4.1
19ABe6vmiAB1AB:56-275Ribosomal_S22007 → 2007.6 → 2007.6.1
20ACe6vmiAC1AC:36-167MRP-S24327 → 327.11 → 327.11.1
21ADe6vmiAD1AD:216-286Ribosomal_S5330 → 330.1 → 330.1.1
22ADe6vmiAD2AD:88-215Ribosomal_uS5m_N3274 → 3274.1 → 3274.1.1
23ADe6vmiAD3AD:287-430Ribosomal_S5_C212 → 212.1 → 212.1.1
24AEe6vmiAE1AE:2-123Ribosomal_S6304 → 304.12 → 304.12.1
25AFe6vmiAF1AF:35-242Ribosomal_S7167 → 167.1 → 167.1.1
26AGe6vmiAG1AG:70-176,AG:198-396Ribosomal_S9212 → 212.1 → 212.1.1
27AHe6vmiAH1AH:68-189Ribosomal_S10304 → 304.44 → 304.44.1
28AIe6vmiAI1AI:59-194Ribosomal_S112484 → 2484.1 → 2484.1.1
29AJe6vmiAJ1AJ:31-138Ribosom_S12_S232 → 2.1 → 2.1.1
30AKe6vmiAK1AK:28-128Ribosomal_S14377 → 377.1 → 377.1.1
31ALe6vmiAL1AL:64-237Ribosomal_S15616 → 616.1 → 616.1.1
32AMe6vmiAM1AM:10-125Ribosomal_S16837 → 837.1 → 837.1.1
33ANe6vmiAN1AN:5-111Ribosomal_S172 → 2.1 → 2.1.1
34AOe6vmiAO1AO:49-238Ribosomal_S18101 → 101.1 → 101.1.1
35APe6vmiAP1AP:47-142Ribosomal_S18101 → 101.1 → 101.1.1
36AQe6vmiAQ1AQ:2-87Ribosomal_S213666 → 3666.1 → 3666.1.1
37ARe6vmiAR1AR:66-357MRP-S223966 → 3966.1 → 3966.1.1
38ASe6vmiAS1AS:2-136MRP-S23103 → 103.15 → 103.15.1
39ATe6vmiAT1AT:2-169L51_S25_CI-B82485 → 2485.1 → 2485.1.1
40AUe6vmiAU1AU:27-203MRP-S263967 → 3967.1 → 3967.1.1
41AVe6vmiAV1AV:28-291,AV:312-390MRP-S27109 → 109.4 → 109.4.1
42AWe6vmiAW1AW:77-173MRP-S352 → 2.1 → 2.1.1
43AXe6vmiAX1AX:347-398DAP3148 → 148.1 → 148.1.3
44AXe6vmiAX2AX:46-346DAP32004 → 2004.1 → 2004.1.1
45AYe6vmiAY1AY:276-395MRP-S313968 → 3968.1 → 3968.1.1
46AZe6vmiAZ1AZ:4-102MRP-S333969 → 3969.1 → 3969.1.1
47be6vmib1b:2-149L51_S25_CI-B82485 → 2485.1 → 2485.1.1
48ce6vmic1c:234-319DSRM_MRPL44330 → 330.1 → 330.1.1
49ce6vmic2c:31-233RM44_endonuclase171 → 171.1 → 171.1.1
50de6vmid1d:38-294Tim44243 → 243.1 → 243.1.1
51De6vmiD1D:61-178Ribosomal_L22 → 2.1 → 2.1.1
52De6vmiD2D:179-299Ribosomal_L2_C4 → 4.1 → 4.1.1
53ee6vmie1e:43-279MRP-L46221 → 221.4 → 221.4.1
54Ee6vmiE1E:43-348Ribosomal_L31 → 1.1 → 1.1.7
55fe6vmif1f:48-193Ribosomal_S10304 → 304.44 → 304.44.1
56Fe6vmiF1F:45-273Ribosomal_L47559 → 7559.1 → 7559.1.1
57ge6vmig1g:35-166Img2306 → 306.3 → 306.3.1
58he6vmih1h:49-131Ribosomal_L50132 → 132.1 → 132.1.1
59He6vmiH1H:53-150Ribosomal_L9_N+bL9m_N4076 → 4076.1 → 4076.1.1
60ie6vmii1i:32-128MRP-L51192 → 192.26 → 192.26.1
61Ie6vmiI1I:29-207Ribosomal_L10304 → 304.60 → 304.60.1
62je6vmij1j:24-116MRPL523906 → 3906.1 → 3906.1.1
63Je6vmiJ1J:18-83Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
64Je6vmiJ2J:83-192Ribosomal_L11101 → 101.1 → 101.1.16
65ke6vmik1k:2-97MRP_L532485 → 2485.1 → 2485.1.1
66Ke6vmiK1K:2-178Ribosomal_L132490 → 2490.2 → 2490.2.1
67Le6vmiL1L:31-145Ribosomal_L143174 → 3174.1 → 3174.1.1
68me6vmim1m:34-78Mitoc_L554987 → 4987.1 → 4987.1.1
69Me6vmiM1M:10-296Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
70Ne6vmiN1N:30-251Ribosomal_L16325 → 325.1 → 325.1.5
71oe6vmio1o:9-102MRP-633907 → 3907.1 → 3907.1.1
72Oe6vmiO1O:9-136Ribosomal_L17218 → 218.3 → 218.3.1
73pe6vmip1p:38-196RF-1330 → 330.3 → 330.3.1
74Pe6vmiP1P:38-180Ribosomal_L18p2484 → 2484.1 → 2484.1.1
75qe6vmiq1q:25-152CR6_interact3866 → 3866.1 → 3866.1.1
76Qe6vmiQ1Q:74-292Ribosomal_L194 → 4.1 → 4.1.1
77re6vmir1r:35-196Ribosomal_S18101 → 101.1 → 101.1.1
78Re6vmiR1R:10-124Ribosomal_L20143 → 143.2 → 143.2.1
79se6vmis1s:40-119,s:140-432PDCD92008 → 2008.1 → 2008.1.1
80Se6vmiS1S:49-204Ribosomal_L21p4186 → 4186.1 → 4186.1.1
81Te6vmiT1T:47-212Ribosomal_L22218 → 218.2 → 218.2.1
82TAe6vmiTA1TA:46-90Ribosomal_L12_N156 → 156.1 → 156.1.1
83TBe6vmiTB1TB:64-90Ribosomal_L12_N156 → 156.1 → 156.1.1
84TCe6vmiTC1TC:128-198Ribosomal_L12308 → 308.1 → 308.1.1
85Ue6vmiU1U:2-153Ribosomal_L23304 → 304.109 → 304.109.1
86ve6vmiv1v:525-643EFG_IV212 → 212.1 → 212.1.1
87ve6vmiv2v:320-445GTP_EFTU_D21 → 1.1 → 1.1.7
88ve6vmiv3v:644-751EFG_C304 → 304.24 → 304.24.1
89ve6vmiv4v:40-321GTP_EFTU2004 → 2004.1 → 2004.1.1
90ve6vmiv5v:446-524EFG_III304 → 304.24 → 304.24.1
91Ve6vmiV1V:11-216KOW,ribosomal_L244 → 4.1 → 4.1.1
92We6vmiW1W:38-148Ribosomal_L27325 → 325.1 → 325.1.8
93Xe6vmiX1X:2-244Ribosomal_L284232 → 4232.1 → 4232.1.1
94Ye6vmiY1Y:63-238MRP-L47192 → 192.4 → 192.4.1
95Ze6vmiZ1Z:35-154Ribosomal_L30887 → 887.1 → 887.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors