PDB 6VVV
X-RAY DIFFRACTION3.20 Å0 chains24 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
6 domainsChain Dview chain
8 domainsChain Eview chain
1 domainChain Jview chain
1 domainChain Tview chain
1 domainAll Domains (24)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e6vvvA1 | A:1-47,A:170-223 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e6vvvA2 | A:48-169 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e6vvvB1 | B:48-169 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | B | e6vvvB2 | B:2-47,B:170-236 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | C | e6vvvC1 | C:21-125,C:147-173,C:366-449,C:486-491 | RNA_pol_Rpb2_1 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e6vvvC2 | C:701-739,C:866-1026 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 7 | C | e6vvvC3 | C:738-869 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 8 | C | e6vvvC4 | C:1027-1139 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 9 | C | e6vvvC5 | C:492-531,C:575-629 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 10 | C | e6vvvC6 | C:630-700 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 11 | D | e6vvvD1 | D:4-147,D:230-408 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 12 | D | e6vvvD2 | D:409-452,D:493-573 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 13 | D | e6vvvD3 | D:453-492 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 14 | D | e6vvvD4 | D:574-729 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 15 | D | e6vvvD5 | D:730-887 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 16 | D | e6vvvD6 | D:888-973 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 17 | D | e6vvvD7 | D:974-1010,D:1027-1042,D:1118-1283 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 18 | D | e6vvvD8 | D:1043-1090,D:1098-1117 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | E | e6vvvE1 | E:25-106 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 20 | F | e6vvvF1 | F:302-358 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 21 | F | e6vvvF2 | F:163-301 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 22 | F | e6vvvF3 | F:330-332,F:359-464 | Sigma70_r3,Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 23 | J | e6vvvJ1 | J:26-113 | RbpA | 375 → 375.1 → 375.1.1 |
| 24 | T | e6vvvT1 | T:251-303 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors