PDB 6VYR
ELECTRON MICROSCOPY0 chains86 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
Loading viewer...
Domains by Chain
Chain 0view chain
1 domainChain 1view chain
1 domainChain 2view chain
1 domainChain 3view chain
1 domainChain 4view chain
1 domainChain 9view chain
1 domainChain AAview chain
10 domainsChain ABview chain
1 domainChain ACview chain
2 domainsChain ADview chain
2 domainsChain AEview chain
9 domainsChain bview chain
1 domainChain cview chain
1 domainChain Cview chain
1 domainChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
1 domainChain Fview chain
1 domainChain gview chain
1 domainChain Gview chain
1 domainChain hview chain
2 domainsChain iview chain
1 domainChain Iview chain
2 domainsChain jview chain
1 domainChain Jview chain
1 domainChain kview chain
1 domainChain Kview chain
2 domainsChain lview chain
1 domainChain Lview chain
1 domainChain mview chain
1 domainChain Mview chain
1 domainChain nview chain
1 domainChain Nview chain
2 domainsChain oview chain
1 domainChain Oview chain
1 domainChain pview chain
2 domainsChain Pview chain
1 domainChain qview chain
1 domainChain Qview chain
1 domainChain rview chain
2 domainsChain Rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
1 domainChain Tview chain
1 domainChain uview chain
1 domainChain Uview chain
1 domainChain vview chain
1 domainChain Vview chain
1 domainChain wview chain
1 domainChain Wview chain
1 domainChain xview chain
1 domainChain Xview chain
1 domainChain yview chain
1 domainChain Yview chain
2 domainsChain zview chain
1 domainChain Zview chain
1 domainAll Domains (86)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e6vyr01 | 0:1-103 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 2 | 1 | e6vyr11 | 1:1-110 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 3 | 2 | e6vyr21 | 2:1-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 4 | 3 | e6vyr31 | 3:2-104 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 5 | 4 | e6vyr41 | 4:1-94 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 6 | 9 | e6vyr91 | 9:1-148 | Ribosomal_L10 | 304 → 304.60 → 304.60.1 |
| 7 | AA | e6vyrAA1 | AA:2-151,AA:452-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 8 | AA | e6vyrAA2 | AA:791-827,AA:1063-1239 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 9 | AA | e6vyrAA3 | AA:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 10 | AA | e6vyrAA4 | AA:828-891,AA:911-938,AA:1045-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | AA | e6vyrAA5 | AA:939-1044 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 12 | AA | e6vyrAA6 | AA:226-234,AA:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 13 | AA | e6vyrAA7 | AA:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 14 | AA | e6vyrAA8 | AA:152-225,AA:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | AA | e6vyrAA9 | AA:578-712 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 16 | AA | e6vyrAA10 | AA:1240-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 17 | AB | e6vyrAB1 | AB:6-117 | NusG | 304 → 304.17 → 304.17.1 |
| 18 | AC | e6vyrAC1 | AC:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | AC | e6vyrAC2 | AC:6-52,AC:179-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 20 | AD | e6vyrAD1 | AD:6-52,AD:174-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 21 | AD | e6vyrAD2 | AD:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 22 | AE | e6vyrAE1 | AE:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 23 | AE | e6vyrAE2 | AE:932-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | AE | e6vyrAE3 | AE:1132-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 25 | AE | e6vyrAE4 | AE:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 26 | AE | e6vyrAE5 | AE:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 27 | AE | e6vyrAE6 | AE:16-341 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 28 | AE | e6vyrAE7 | AE:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 29 | AE | e6vyrAE8 | AE:895-931,AE:1214-1373 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 30 | AE | e6vyrAE9 | AE:1023-1131 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 31 | b | e6vyrb1 | b:10-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 32 | c | e6vyrc1 | c:2-78 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 33 | C | e6vyrC1 | C:10-75 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 34 | e | e6vyre1 | e:2-63 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 35 | E | e6vyrE1 | E:2-87 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 36 | f | e6vyrf1 | f:2-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 37 | F | e6vyrF1 | F:2-71 | Ribosomal_S21 | 3666 → 3666.1 → 3666.1.1 |
| 38 | g | e6vyrg1 | g:1-66 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 39 | G | e6vyrG1 | G:3-227 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 40 | h | e6vyrh1 | h:2-125 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 41 | h | e6vyrh2 | h:126-272 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 42 | H | e6vyrH1 | H:87-176,H:264-266 | S1 | 2 → 2.1 → 2.1.1 |
| 43 | H | e6vyrH2 | H:267-348 | S1 | 2 → 2.1 → 2.1.1 |
| 44 | H | e6vyrH3 | H:3-89 | S1 | 2 → 2.1 → 2.1.1 |
| 45 | i | e6vyri1 | i:2-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 46 | I | e6vyrI1 | I:2-107 | KH_2 | 327 → 327.11 → 327.11.1 |
| 47 | I | e6vyrI2 | I:108-209 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 48 | j | e6vyrj1 | j:1-209 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 49 | J | e6vyrJ1 | J:2-206 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 50 | k | e6vyrk1 | k:4-55 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 51 | K | e6vyrK1 | K:79-165 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 52 | K | e6vyrK2 | K:10-78 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 53 | l | e6vyrl1 | l:1-201 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 54 | L | e6vyrL1 | L:1-104 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 55 | m | e6vyrm1 | m:1-46 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 56 | M | e6vyrM1 | M:2-152 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 57 | n | e6vyrn1 | n:2-178 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 58 | N | e6vyrN1 | N:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 59 | N | e6vyrN2 | N:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 60 | o | e6vyro1 | o:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 61 | O | e6vyrO1 | O:4-130 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 62 | p | e6vyrp1 | p:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 63 | p | e6vyrp2 | p:83-176 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 64 | P | e6vyrP1 | P:5-103 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 65 | q | e6vyrq1 | q:1-38 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 66 | Q | e6vyrQ1 | Q:13-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 67 | r | e6vyrr1 | r:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 68 | r | e6vyrr2 | r:55-149 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 69 | R | e6vyrR1 | R:2-124 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 70 | s | e6vyrs1 | s:1-142 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 71 | S | e6vyrS1 | S:2-101 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 72 | t | e6vyrt1 | t:1-123 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 73 | T | e6vyrT1 | T:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 74 | u | e6vyru1 | u:1-144 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 75 | U | e6vyrU1 | U:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 76 | v | e6vyrv1 | v:1-136 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 77 | V | e6vyrV1 | V:4-83 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 78 | w | e6vyrw1 | w:1-119 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 79 | W | e6vyrW1 | W:2-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 80 | x | e6vyrx1 | x:2-117 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 81 | X | e6vyrX1 | X:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 82 | y | e6vyry1 | y:2-115 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 83 | Y | e6vyrY1 | Y:1-71 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 84 | Y | e6vyrY2 | Y:72-141 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 85 | z | e6vyrz1 | z:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 86 | Z | e6vyrZ1 | Z:1-30 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors