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PDB 6VYW

ELECTRON MICROSCOPY0 chains83 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (83)

#ChainDomain IDRangeFamilyClassification
10e6vyw010:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
21e6vyw111:1-110Ribosomal_L22218 → 218.2 → 218.2.1
32e6vyw212:1-94Ribosomal_L23304 → 304.109 → 304.109.1
43e6vyw313:2-104KOW,ribosomal_L244 → 4.1 → 4.1.1
54e6vyw414:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
6AAe6vywAA1AA:578-7124042.1.1.04042 → 4042.1 → 4042.1.1
7AAe6vywAA2AA:828-891,AA:911-938,AA:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
8AAe6vywAA3AA:152-225,AA:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
9AAe6vywAA4AA:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
10AAe6vywAA5AA:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
11AAe6vywAA6AA:791-827,AA:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
12AAe6vywAA7AA:2-151,AA:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
13AAe6vywAA8AA:226-234,AA:289-342275.1.1.0275 → 275.1 → 275.1.1
14AAe6vywAA9AA:235-288275.1.1.0275 → 275.1 → 275.1.1
15AAe6vywAA10AA:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
16ABe6vywAB1AB:6-117NusG304 → 304.17 → 304.17.1
17ACe6vywAC1AC:6-52,AC:179-235RNA_pol_L305 → 305.1 → 305.1.1
18ACe6vywAC2AC:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
19ADe6vywAD1AD:53-173RNA_pol_A_bac240 → 240.2 → 240.2.1
20ADe6vywAD2AD:6-52,AD:174-233RNA_pol_L305 → 305.1 → 305.1.1
21AEe6vywAE1AE:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
22AEe6vywAE2AE:16-3414246.1.1.04246 → 4246.1 → 4246.1.1
23AEe6vywAE3AE:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
24AEe6vywAE4AE:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
25AEe6vywAE5AE:811-894275.1.1.0275 → 275.1 → 275.1.1
26AEe6vywAE6AE:1132-1215325.1.7.0325 → 325.1 → 325.1.7
27AEe6vywAE7AE:932-1022325.1.7.0325 → 325.1 → 325.1.7
28AEe6vywAE8AE:895-931,AE:1214-1373RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
29AEe6vywAE9AE:1023-1131325.1.7.0325 → 325.1 → 325.1.7
30AFe6vywAF1AF:2-84RNA_pol_Rpb6152 → 152.1 → 152.1.2
31be6vywb1b:10-85Ribosomal_L27325 → 325.1 → 325.1.8
32ce6vywc1c:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
33Ce6vywC1C:10-75Ribosomal_S18101 → 101.1 → 101.1.1
34ee6vywe1e:2-63Ribosomal_L29192 → 192.4 → 192.4.1
35Ee6vywE1E:2-87Ribosomal_S20p604 → 604.9 → 604.9.1
36fe6vywf1f:2-59Ribosomal_L30887 → 887.1 → 887.1.1
37Fe6vywF1F:2-71Ribosomal_S213666 → 3666.1 → 3666.1.1
38ge6vywg1g:1-66Ribosomal_L314987 → 4987.1 → 4987.1.1
39Ge6vywG1G:3-227Ribosomal_S22007 → 2007.6 → 2007.6.1
40he6vywh1h:126-272Ribosomal_L2_C4 → 4.1 → 4.1.1
41he6vywh2h:2-125Ribosomal_L22 → 2.1 → 2.1.1
42He6vywH1H:87-176,H:264-266S12 → 2.1 → 2.1.1
43He6vywH2H:267-348S12 → 2.1 → 2.1.1
44He6vywH3H:3-89S12 → 2.1 → 2.1.1
45ie6vywi1i:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
46Ie6vywI1I:2-107KH_2327 → 327.11 → 327.11.1
47Ie6vywI2I:108-209Ribosomal_S3_C230 → 230.2 → 230.2.1
48je6vywj1j:1-209Ribosomal_L31 → 1.1 → 1.1.7
49Je6vywJ1J:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
50ke6vywk1k:4-55Ribosomal_L33375 → 375.1 → 375.1.1
51Ke6vywK1K:10-78Ribosomal_S5330 → 330.1 → 330.1.1
52Ke6vywK2K:79-165Ribosomal_S5_C212 → 212.1 → 212.1.1
53le6vywl1l:1-201Ribosomal_L47559 → 7559.1 → 7559.1.1
54Le6vywL1L:1-104Ribosomal_S6304 → 304.12 → 304.12.1
55me6vywm1m:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
56Me6vywM1M:2-152Ribosomal_S7167 → 167.1 → 167.1.1
57ne6vywn1n:2-178Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
58Ne6vywN1N:2-66Ribosomal_S8320 → 320.2 → 320.2.1
59Ne6vywN2N:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
60oe6vywo1o:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
61Oe6vywO1O:4-130Ribosomal_S9212 → 212.1 → 212.1.1
62pe6vywp1p:83-176Ribosomal_L6318 → 318.1 → 318.1.1
63pe6vywp2p:2-82Ribosomal_L6318 → 318.1 → 318.1.1
64Pe6vywP1P:5-103Ribosomal_S10304 → 304.44 → 304.44.1
65qe6vywq1q:1-38Ribosomal_L36919 → 919.1 → 919.1.1
66Qe6vywQ1Q:13-129Ribosomal_S112484 → 2484.1 → 2484.1.1
67re6vywr1r:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
68re6vywr2r:55-149Ribosomal_L9_C523 → 523.1 → 523.1.1
69Re6vywR1R:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
70se6vyws1s:1-142Ribosomal_L132490 → 2490.2 → 2490.2.1
71Se6vywS1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
72te6vywt1t:1-123Ribosomal_L143174 → 3174.1 → 3174.1.1
73Te6vywT1T:2-89Ribosomal_S15616 → 616.1 → 616.1.1
74ue6vywu1u:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
75Ue6vywU1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
76ve6vywv1v:1-136Ribosomal_L16325 → 325.1 → 325.1.5
77Ve6vywV1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
78we6vyww1w:1-119Ribosomal_L17218 → 218.3 → 218.3.1
79We6vywW1W:2-84Ribosomal_S19838 → 838.1 → 838.1.1
80xe6vywx1x:2-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
81Xe6vywX1X:2-117Ribosomal_S13102 → 102.2 → 102.2.1
82ye6vywy1y:2-115Ribosomal_L194 → 4.1 → 4.1.1
83ze6vywz1z:2-118Ribosomal_L20143 → 143.2 → 143.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors