PDB 6VYX
ELECTRON MICROSCOPY0 chains80 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
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1 domainChain 1view chain
1 domainChain 2view chain
1 domainChain 3view chain
1 domainChain 4view chain
1 domainChain AAview chain
7 domainsChain ABview chain
1 domainChain ACview chain
2 domainsChain ADview chain
2 domainsChain AEview chain
9 domainsChain AFview chain
1 domainChain bview chain
1 domainChain cview chain
1 domainChain Cview chain
1 domainChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
1 domainChain Fview chain
1 domainChain gview chain
1 domainChain Gview chain
1 domainChain hview chain
2 domainsChain iview chain
1 domainChain Iview chain
2 domainsChain jview chain
1 domainChain Jview chain
1 domainChain kview chain
1 domainChain Kview chain
2 domainsChain lview chain
1 domainChain Lview chain
1 domainChain mview chain
1 domainChain Mview chain
1 domainChain nview chain
1 domainChain Nview chain
2 domainsChain oview chain
1 domainChain Oview chain
1 domainChain pview chain
2 domainsChain Pview chain
1 domainChain qview chain
1 domainChain Qview chain
1 domainChain rview chain
2 domainsChain Rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
1 domainChain Tview chain
1 domainChain uview chain
1 domainChain Uview chain
1 domainChain vview chain
1 domainChain Vview chain
1 domainChain wview chain
1 domainChain Wview chain
1 domainChain xview chain
1 domainChain Xview chain
1 domainChain yview chain
1 domainChain zview chain
1 domainAll Domains (80)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e6vyx01 | 0:1-103 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 2 | 1 | e6vyx11 | 1:1-110 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 3 | 2 | e6vyx21 | 2:1-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 4 | 3 | e6vyx31 | 3:2-104 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 5 | 4 | e6vyx41 | 4:1-94 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 6 | AA | e6vyxAA1 | AA:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 7 | AA | e6vyxAA2 | AA:153-226,AA:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 8 | AA | e6vyxAA3 | AA:828-942,AA:1042-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 9 | AA | e6vyxAA4 | AA:791-828,AA:1060-1125,AA:1180-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 10 | AA | e6vyxAA5 | AA:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | AA | e6vyxAA6 | AA:10-152,AA:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 12 | AA | e6vyxAA7 | AA:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 13 | AB | e6vyxAB1 | AB:6-117 | NusG | 304 → 304.17 → 304.17.1 |
| 14 | AC | e6vyxAC1 | AC:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 15 | AC | e6vyxAC2 | AC:6-52,AC:179-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 16 | AD | e6vyxAD1 | AD:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 17 | AD | e6vyxAD2 | AD:6-52,AD:174-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | AE | e6vyxAE1 | AE:1023-1131 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | AE | e6vyxAE2 | AE:1132-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | AE | e6vyxAE3 | AE:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 21 | AE | e6vyxAE4 | AE:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 22 | AE | e6vyxAE5 | AE:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 23 | AE | e6vyxAE6 | AE:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 24 | AE | e6vyxAE7 | AE:16-341 | 4246.1.1.0 | 4246 → 4246.1 → 4246.1.1 |
| 25 | AE | e6vyxAE8 | AE:895-931,AE:1214-1373 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 26 | AE | e6vyxAE9 | AE:932-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 27 | AF | e6vyxAF1 | AF:2-84 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 28 | b | e6vyxb1 | b:10-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 29 | c | e6vyxc1 | c:2-78 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 30 | C | e6vyxC1 | C:10-75 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 31 | e | e6vyxe1 | e:2-63 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 32 | E | e6vyxE1 | E:2-87 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 33 | f | e6vyxf1 | f:2-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 34 | F | e6vyxF1 | F:2-71 | Ribosomal_S21 | 3666 → 3666.1 → 3666.1.1 |
| 35 | g | e6vyxg1 | g:1-66 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 36 | G | e6vyxG1 | G:3-227 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 37 | h | e6vyxh1 | h:126-272 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 38 | h | e6vyxh2 | h:2-125 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 39 | H | e6vyxH1 | H:87-176,H:264-266 | S1 | 2 → 2.1 → 2.1.1 |
| 40 | H | e6vyxH2 | H:267-348 | S1 | 2 → 2.1 → 2.1.1 |
| 41 | H | e6vyxH3 | H:3-89 | S1 | 2 → 2.1 → 2.1.1 |
| 42 | i | e6vyxi1 | i:2-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 43 | I | e6vyxI1 | I:108-209 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 44 | I | e6vyxI2 | I:2-107 | KH_2 | 327 → 327.11 → 327.11.1 |
| 45 | j | e6vyxj1 | j:1-209 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 46 | J | e6vyxJ1 | J:2-206 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 47 | k | e6vyxk1 | k:4-55 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 48 | K | e6vyxK1 | K:79-165 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 49 | K | e6vyxK2 | K:10-78 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 50 | l | e6vyxl1 | l:1-201 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 51 | L | e6vyxL1 | L:1-104 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 52 | m | e6vyxm1 | m:1-46 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 53 | M | e6vyxM1 | M:2-152 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 54 | n | e6vyxn1 | n:2-178 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 55 | N | e6vyxN1 | N:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 56 | N | e6vyxN2 | N:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 57 | o | e6vyxo1 | o:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 58 | O | e6vyxO1 | O:4-130 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 59 | p | e6vyxp1 | p:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 60 | p | e6vyxp2 | p:83-176 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 61 | P | e6vyxP1 | P:5-103 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 62 | q | e6vyxq1 | q:1-38 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 63 | Q | e6vyxQ1 | Q:13-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 64 | r | e6vyxr1 | r:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 65 | r | e6vyxr2 | r:55-149 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 66 | R | e6vyxR1 | R:2-124 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 67 | s | e6vyxs1 | s:1-142 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 68 | S | e6vyxS1 | S:2-101 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 69 | t | e6vyxt1 | t:1-123 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 70 | T | e6vyxT1 | T:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 71 | u | e6vyxu1 | u:1-144 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 72 | U | e6vyxU1 | U:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 73 | v | e6vyxv1 | v:1-136 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 74 | V | e6vyxV1 | V:4-83 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 75 | w | e6vyxw1 | w:1-119 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 76 | W | e6vyxW1 | W:2-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 77 | x | e6vyxx1 | x:2-117 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 78 | X | e6vyxX1 | X:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 79 | y | e6vyxy1 | y:2-115 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 80 | z | e6vyxz1 | z:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors