PDB 6YDW
ELECTRON MICROSCOPY0 chains99 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Chain Aaview chain
1 domainChain Abview chain
1 domainChain ABview chain
1 domainChain Acview chain
1 domainChain ACview chain
1 domainChain Adview chain
1 domainChain Aeview chain
1 domainChain Afview chain
1 domainChain AFview chain
1 domainChain Agview chain
2 domainsChain AGview chain
1 domainChain Ahview chain
1 domainChain Aiview chain
1 domainChain AIview chain
1 domainChain Ajview chain
1 domainChain AJview chain
1 domainChain Akview chain
1 domainChain AKview chain
1 domainChain ALview chain
1 domainChain Amview chain
1 domainChain Anview chain
1 domainChain ANview chain
1 domainChain Aoview chain
2 domainsChain AOview chain
1 domainChain Apview chain
1 domainChain APview chain
1 domainChain AQview chain
1 domainChain ARview chain
1 domainChain AUview chain
1 domainChain B0view chain
1 domainChain B1view chain
1 domainChain B2view chain
1 domainChain B3view chain
1 domainChain B4view chain
1 domainChain B5view chain
1 domainChain B6view chain
1 domainChain B7view chain
1 domainChain B8view chain
1 domainChain B9view chain
1 domainChain Baview chain
1 domainChain Bbview chain
1 domainChain Bcview chain
2 domainsChain BCview chain
5 domainsChain Bdview chain
1 domainChain BDview chain
2 domainsChain Beview chain
1 domainChain BEview chain
1 domainChain Bfview chain
1 domainChain BFview chain
1 domainChain Bgview chain
1 domainChain Bhview chain
2 domainsChain Biview chain
1 domainChain BIview chain
1 domainChain Bjview chain
1 domainChain BJview chain
1 domainChain Bkview chain
1 domainChain BKview chain
2 domainsChain Blview chain
1 domainChain Bmview chain
1 domainChain Bnview chain
1 domainChain BNview chain
1 domainChain Boview chain
1 domainChain BOview chain
1 domainChain Bpview chain
1 domainChain BPview chain
1 domainChain BQview chain
1 domainChain BRview chain
1 domainChain BSview chain
1 domainChain Btview chain
1 domainChain BTview chain
1 domainChain Buview chain
1 domainChain BUview chain
1 domainChain Bvview chain
1 domainChain BVview chain
1 domainChain Bwview chain
1 domainChain BWview chain
1 domainChain Bxview chain
1 domainChain BXview chain
1 domainChain BYview chain
1 domainChain CLview chain
1 domainChain DLview chain
1 domainChain ELview chain
1 domainChain FLview chain
1 domainChain GLview chain
1 domainChain HLview chain
1 domainChain LLview chain
1 domainAll Domains (99)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | Aa | e6ydwAa1 | Aa:88-379 | MRP-S22 | 3966 → 3966.1 → 3966.1.1 |
| 2 | Ab | e6ydwAb1 | Ab:2-136 | MRP-S23 | 103 → 103.15 → 103.15.1 |
| 3 | AB | e6ydwAB1 | AB:55-274 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 4 | Ac | e6ydwAc1 | Ac:2-170 | L51_S25_CI-B8 | 2485 → 2485.1 → 2485.1.1 |
| 5 | AC | e6ydwAC1 | AC:36-167 | MRP-S24 | 327 → 327.11 → 327.11.1 |
| 6 | Ad | e6ydwAd1 | Ad:27-203 | MRP-S26 | 3967 → 3967.1 → 3967.1.1 |
| 7 | Ae | e6ydwAe1 | Ae:68-455 | MRP-S27 | 109 → 109.4 → 109.4.1 |
| 8 | AE | e6ydwAE1 | AE:216-286 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 9 | AE | e6ydwAE2 | AE:287-430 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 10 | AE | e6ydwAE3 | AE:88-215 | Ribosomal_uS5m_N | 3274 → 3274.1 → 3274.1.1 |
| 11 | Af | e6ydwAf1 | Af:78-176 | MRP-S35 | 2 → 2.1 → 2.1.1 |
| 12 | AF | e6ydwAF1 | AF:2-123 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 13 | Ag | e6ydwAg1 | Ag:45-345 | DAP3 | 2004 → 2004.1 → 2004.1.1 |
| 14 | Ag | e6ydwAg2 | Ag:346-397 | DAP3 | 148 → 148.1 → 148.1.3 |
| 15 | AG | e6ydwAG1 | AG:35-242 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 16 | Ah | e6ydwAh1 | Ah:268-387 | MRP-S31 | 3968 → 3968.1 → 3968.1.1 |
| 17 | Ai | e6ydwAi1 | Ai:4-102 | MRP-S33 | 3969 → 3969.1 → 3969.1.1 |
| 18 | AI | e6ydwAI1 | AI:70-397 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 19 | Aj | e6ydwAj1 | Aj:1-213 | MRP-S34 | 4 → 4.27 → 4.27.1 |
| 20 | AJ | e6ydwAJ1 | AJ:50-189 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 21 | Ak | e6ydwAk1 | Ak:51-325 | MRP-S28 | 330 → 330.3 → 330.3.1 |
| 22 | AK | e6ydwAK1 | AK:60-196 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 23 | AL | e6ydwAL1 | AL:31-139 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 24 | Am | e6ydwAm1 | Am:2-117 | CHCH | 568 → 568.1 → 568.1.1 |
| 25 | An | e6ydwAn1 | An:128-199 | COX24_C | 3970 → 3970.1 → 3970.1.1 |
| 26 | AN | e6ydwAN1 | AN:28-128 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 27 | Ao | e6ydwAo1 | Ao:162-379 | PPR_3, Rib_mS39_PPR | 109 → 109.4 → 109.4.1 |
| 28 | Ao | e6ydwAo2 | Ao:371-641 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 29 | AO | e6ydwAO1 | AO:65-239 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 30 | Ap | e6ydwAp1 | Ap:49-238 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 31 | AP | e6ydwAP1 | AP:10-126 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 32 | AQ | e6ydwAQ1 | AQ:2-113 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 33 | AR | e6ydwAR1 | AR:47-143 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 34 | AU | e6ydwAU1 | AU:2-87 | Ribosomal_S21 | 3666 → 3666.1 → 3666.1.1 |
| 35 | B0 | e6ydwB01 | B0:39-148 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 36 | B1 | e6ydwB11 | B1:2-245 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.2 |
| 37 | B2 | e6ydwB21 | B2:65-243 | MRP-L47 | 192 → 192.4 → 192.4.1 |
| 38 | B3 | e6ydwB31 | B3:35-152 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 39 | B4 | e6ydwB41 | B4:35-96 | Mitoc_L55 | 4987 → 4987.1 → 4987.1.1 |
| 40 | B5 | e6ydwB51 | B5:79-188 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 41 | B6 | e6ydwB61 | B6:13-64 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 42 | B7 | e6ydwB71 | B7:50-95 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 43 | B8 | e6ydwB81 | B8:94-188 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 44 | B9 | e6ydwB91 | B9:63-100 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 45 | Ba | e6ydwBa1 | Ba:30-422 | PDCD9 | 2008 → 2008.1 → 2008.1.1 |
| 46 | Bb | e6ydwBb1 | Bb:27-380 | PBP | 11 → 11.1 → 11.1.7 |
| 47 | Bc | e6ydwBc1 | Bc:30-61,Bc:136-324 | 309.1.2.0 | 309 → 309.1 → 309.1.2 |
| 48 | Bc | e6ydwBc2 | Bc:62-135 | TGS | 221 → 221.1 → 221.1.1 |
| 49 | BC | e6ydwBC1 | BC:320-445 | GTP_EFTU_D2 | 1 → 1.1 → 1.1.7 |
| 50 | BC | e6ydwBC2 | BC:446-524 | EFG_III | 304 → 304.24 → 304.24.1 |
| 51 | BC | e6ydwBC3 | BC:644-742 | EFG_C | 304 → 304.24 → 304.24.1 |
| 52 | BC | e6ydwBC4 | BC:40-321 | GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 53 | BC | e6ydwBC5 | BC:525-643 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 54 | Bd | e6ydwBd1 | Bd:39-156 | MRP-L28 | 3864 → 3864.1 → 3864.1.1 |
| 55 | BD | e6ydwBD1 | BD:61-179 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 56 | BD | e6ydwBD2 | BD:180-300 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 57 | Be | e6ydwBe1 | Be:14-135 | MRP-L27 | 3865 → 3865.1 → 3865.1.1 |
| 58 | BE | e6ydwBE1 | BE:42-348 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 59 | Bf | e6ydwBf1 | Bf:35-142 | MRP-S32 | 3905 → 3905.1 → 3905.1.1 |
| 60 | BF | e6ydwBF1 | BF:45-273 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 61 | Bg | e6ydwBg1 | Bg:2-149 | L51_S25_CI-B8 | 2485 → 2485.1 → 2485.1.1 |
| 62 | Bh | e6ydwBh1 | Bh:31-234 | RM44_endonuclase | 171 → 171.1 → 171.1.1 |
| 63 | Bh | e6ydwBh2 | Bh:235-319 | DSRM_MRPL44 | 330 → 330.1 → 330.1.1 |
| 64 | Bi | e6ydwBi1 | Bi:38-297 | Tim44 | 243 → 243.1 → 243.1.1 |
| 65 | BI | e6ydwBI1 | BI:53-150 | Ribosomal_L9_N+bL9m_N | 4076 → 4076.1 → 4076.1.1 |
| 66 | Bj | e6ydwBj1 | Bj:43-279 | MRP-L46 | 221 → 221.4 → 221.4.1 |
| 67 | BJ | e6ydwBJ1 | BJ:29-196 | Ribosomal_L10 | 304 → 304.60 → 304.60.1 |
| 68 | Bk | e6ydwBk1 | Bk:48-212 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 69 | BK | e6ydwBK1 | BK:17-83 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 70 | BK | e6ydwBK2 | BK:83-192 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 71 | Bl | e6ydwBl1 | Bl:34-166 | Img2 | 306 → 306.3 → 306.3.1 |
| 72 | Bm | e6ydwBm1 | Bm:51-159 | Ribosomal_L50 | 132 → 132.1 → 132.1.1 |
| 73 | Bn | e6ydwBn1 | Bn:32-128 | MRP-L51 | 192 → 192.26 → 192.26.1 |
| 74 | BN | e6ydwBN1 | BN:2-178 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 75 | Bo | e6ydwBo1 | Bo:23-119 | MRPL52 | 3906 → 3906.1 → 3906.1.1 |
| 76 | BO | e6ydwBO1 | BO:31-145 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 77 | Bp | e6ydwBp1 | Bp:2-98 | MRP_L53 | 2485 → 2485.1 → 2485.1.1 |
| 78 | BP | e6ydwBP1 | BP:9-296 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 79 | BQ | e6ydwBQ1 | BQ:30-251 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 80 | BR | e6ydwBR1 | BR:9-161 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 81 | BS | e6ydwBS1 | BS:38-180 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 82 | Bt | e6ydwBt1 | Bt:9-102 | MRP-63 | 3907 → 3907.1 → 3907.1.1 |
| 83 | BT | e6ydwBT1 | BT:71-292 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 84 | Bu | e6ydwBu1 | Bu:38-195 | RF-1 | 330 → 330.3 → 330.3.1 |
| 85 | BU | e6ydwBU1 | BU:10-149 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 86 | Bv | e6ydwBv1 | Bv:25-159 | CR6_interact | 3866 → 3866.1 → 3866.1.1 |
| 87 | BV | e6ydwBV1 | BV:55-209 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 88 | Bw | e6ydwBw1 | Bw:40-426 | PDCD9 | 2008 → 2008.1 → 2008.1.1 |
| 89 | BW | e6ydwBW1 | BW:45-210 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 90 | Bx | e6ydwBx1 | Bx:35-196 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 91 | BX | e6ydwBX1 | BX:2-150 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 92 | BY | e6ydwBY1 | BY:11-216 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 93 | CL | e6ydwCL1 | CL:46-90 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 94 | DL | e6ydwDL1 | DL:64-90 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 95 | EL | e6ydwEL1 | EL:64-91 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 96 | FL | e6ydwFL1 | FL:64-90 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 97 | GL | e6ydwGL1 | GL:64-90 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 98 | HL | e6ydwHL1 | HL:64-89 | Ribosomal_L12_N | 156 → 156.1 → 156.1.1 |
| 99 | LL | e6ydwLL1 | LL:129-198 | Ribosomal_L12 | 308 → 308.1 → 308.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors