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PDB 6ZQD

ELECTRON MICROSCOPY0 chains88 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (88)

#ChainDomain IDRangeFamilyClassification
1CAe6zqdCA1CA:80-326Fibrillarin2003 → 2003.1 → 2003.1.5
2CBe6zqdCB1CB:85-324Fibrillarin2003 → 2003.1 → 2003.1.5
3CDe6zqdCD1CD:288-329,CD:370-415Nop102 → 102.1 → 102.1.4
4CDe6zqdCD2CD:3-167NOP5NT3407 → 3407.1 → 3407.1.1
5CDe6zqdCD3CD:168-298Nop606 → 606.1 → 606.1.1
6CEe6zqdCE1CE:3-18,CE:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
7CEe6zqdCE2CE:285-403Nop102 → 102.1 → 102.1.4
8CEe6zqdCE3CE:155-284Nop606 → 606.1 → 606.1.1
9CFe6zqdCF1CF:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
10CGe6zqdCG1CG:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
11CHe6zqdCH1CH:115-572WD405 → 5.1 → 5.1.4
12CIe6zqdCI1CI:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
13CJe6zqdCJ1CJ:84-267Brix7502 → 7502.1 → 7502.1.1
14CLe6zqdCL1CL:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
15CLe6zqdCL2CL:929-1016RIBIOP_C1 → 1.1 → 1.1.7
16CLe6zqdCL3CL:818-928RIBIOP_C1 → 1.1 → 1.1.8
17CLe6zqdCL4CL:236-305,CL:614-636,CL:787-817AARP2CN1 → 1.1 → 1.1.7
18CMe6zqdCM1CM:7-182,CM:287-366RTC328 → 328.6 → 328.6.1
19CMe6zqdCM2CM:183-287RTC_insert2485 → 2485.2 → 2485.2.1
20CNe6zqdCN1CN:3-230,CN:252-270RRP7,RRM_Rrp7304 → 304.9 → 304.9.1
21DAe6zqdDA1DA:114-245Ribosomal_S3Ae230 → 230.6 → 230.6.1
22DAe6zqdDA2DA:2-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
23Dbe6zqdDb1Db:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
24Dce6zqdDc1Dc:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
25DEe6zqdDE1DE:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
26DEe6zqdDE2DE:176-247KOW,40S_S4_C4 → 4.1 → 4.1.1
27DEe6zqdDE3DE:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
28DFe6zqdDF1DF:13-225Ribosomal_S7167 → 167.1 → 167.1.1
29DGe6zqdDG1DG:1-218Ribosomal_S6e239 → 239.1 → 239.1.1
30DHe6zqdDH1DH:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
31DHe6zqdDH2DH:4-105Ribosomal_S7e327 → 327.18 → 327.18.1
32DIe6zqdDI1DI:2-123,DI:146-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
33DJe6zqdDJ1DJ:2-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
34DLe6zqdDL1DL:6-145Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
35DNe6zqdDN1DN:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
36DNe6zqdDN2DN:83-151Ribosomal_S15616 → 616.1 → 616.1.1
37DOe6zqdDO1DO:11-137Ribosomal_S112484 → 2484.1 → 2484.1.1
38DQe6zqdDQ1DQ:3-127Ribosomal_S9212 → 212.1 → 212.1.1
39DSe6zqdDS1DS:2-120Ribosomal_S13102 → 102.2 → 102.2.1
40DTe6zqdDT1DT:2-144Ribosomal_S19e101 → 101.1 → 101.1.2
41DWe6zqdDW1DW:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
42DWe6zqdDW2DW:2-67Ribosomal_S8320 → 320.2 → 320.2.1
43DXe6zqdDX1DX:2-144Ribosom_S12_S232 → 2.1 → 2.1.1
44DYe6zqdDY1DY:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
45JDe6zqdJD1JD:377-586DEAD2004 → 2004.1 → 2004.1.1
46JDe6zqdJD2JD:587-646,JD:710-840Helicase_C2004 → 2004.1 → 2004.1.1
47JDe6zqdJD3JD:841-906HA2_N101 → 101.1 → 101.1.2
48JDe6zqdJD4JD:907-947,JD:977-1073HA2_C4156 → 4156.1 → 4156.1.1
49JDe6zqdJD5JD:1074-1187OB_NTP_bind2 → 2.1 → 2.1.1
50JDe6zqdJD6JD:1188-12632.1.1.02 → 2.1 → 2.1.1
51JFe6zqdJF1JF:29-251EMG12488 → 2488.1 → 2488.1.1
52JGe6zqdJG1JG:16-251EMG12488 → 2488.1 → 2488.1.1
53JHe6zqdJH1JH:205-466Bystin109 → 109.4 → 109.4.1
54JIe6zqdJI1JI:1457-1721HAT_PRP39_N109 → 109.4 → 109.4.1
55JJe6zqdJJ1JJ:178-273KH_PNO1_2nd327 → 327.11 → 327.11.2
56JJe6zqdJJ2JJ:90-177KH_8327 → 327.11 → 327.11.2
57JLe6zqdJL1JL:36-216RrnaAD, Methyltransf_252003 → 2003.1 → 2003.1.5
58JLe6zqdJL2JL:217-318RrnaAD102 → 102.2 → 102.2.1
59JPe6zqdJP1JP:65-379WD40, Beta-prop_NUP159_NUP2145 → 5.1 → 5.1.4
60UAe6zqdUA1UA:343-632,UA:675-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
61UAe6zqdUA2UA:735-856Utp12109 → 109.54 → 109.54.1
62UAe6zqdUA3UA:2-223,UA:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
63UDe6zqdUD1UD:29-374WD405 → 5.1 → 5.1.4
64UDe6zqdUD2UD:375-666,UD:731-7765.1.4.05 → 5.1 → 5.1.4
65UEe6zqdUE1UE:3-3725.1.5.05 → 5.1 → 5.1.5
66UEe6zqdUE2UE:434-557Utp12109 → 109.54 → 109.54.1
67UFe6zqdUF1UF:1-196U3_assoc_6, HAT_PRP39_N109 → 109.4 → 109.4.1
68UGe6zqdUG1UG:58-473WD40,BING4CT5 → 5.1 → 5.1.5
69UIe6zqdUI1UI:428-515109.54.1.0109 → 109.54 → 109.54.1
70UJe6zqdUJ1UJ:3-421U3snoRNP10109 → 109.4 → 109.4.1
71ULe6zqdUL1UL:745-773,UL:793-918Utp12109 → 109.54 → 109.54.1
72ULe6zqdUL2UL:5-40,UL:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
73ULe6zqdUL3UL:41-275,UL:321-386WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
74UMe6zqdUM1UM:332-649WD40, Beta-prop_WDR75_2nd5 → 5.1 → 5.1.4
75UMe6zqdUM2UM:7-331WD405 → 5.1 → 5.1.4
76UMe6zqdUM3UM:650-817Utp13109 → 109.54 → 109.54.1
77UOe6zqdUO1UO:2-364WD405 → 5.1 → 5.1.5
78UOe6zqdUO2UO:388-512UTP15_C109 → 109.54 → 109.54.1
79URe6zqdUR1UR:235-591WD405 → 5.1 → 5.1.4
80UUe6zqdUU1UU:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
81UUe6zqdUU2UU:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
82UVe6zqdUV1UV:357-514Nrap_D2102 → 102.1 → 102.1.3
83UVe6zqdUV2UV:906-983,UV:1010-1091Nrap_D5102 → 102.1 → 102.1.3
84UVe6zqdUV3UV:96-356Nrap316 → 316.1 → 316.1.1
85UVe6zqdUV4UV:1092-1237Nrap_D6304 → 304.20 → 304.20.1
86UVe6zqdUV5UV:515-698Nrap_D3304 → 304.20 → 304.20.1
87UVe6zqdUV6UV:699-905Nrap_D4316 → 316.1 → 316.1.1
88UXe6zqdUX1UX:4-21,UX:41-189Fcf12006 → 2006.1 → 2006.1.4

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors