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PDB 7D4I

ELECTRON MICROSCOPY0 chains119 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (119)

#ChainDomain IDRangeFamilyClassification
13Be7d4i3B13B:79-326Fibrillarin2003 → 2003.1 → 2003.1.5
23Ce7d4i3C13C:86-322Fibrillarin2003 → 2003.1 → 2003.1.5
33De7d4i3D13D:166-300Nop606 → 606.1 → 606.1.1
43De7d4i3D23D:299-415Nop102 → 102.1 → 102.1.4
53De7d4i3D33D:3-165NOP5NT3407 → 3407.1 → 3407.1.1
63Ee7d4i3E13E:3-18,3E:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
73Ee7d4i3E23E:285-403Nop102 → 102.1 → 102.1.4
83Ee7d4i3E33E:155-284Nop606 → 606.1 → 606.1.1
93Fe7d4i3F13F:113-570WD405 → 5.1 → 5.1.5
103Ge7d4i3G13G:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
113He7d4i3H13H:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
125Ce7d4i5C15C:58-473WD40,BING4CT5 → 5.1 → 5.1.5
135Fe7d4i5F15F:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
145Ge7d4i5G15G:84-267Brix7502 → 7502.1 → 7502.1.1
155Ie7d4i5I15I:65-379WD40, Beta-prop_NUP159_NUP2145 → 5.1 → 5.1.4
165Ke7d4i5K15K:40-189Fcf12006 → 2006.1 → 2006.1.4
17A4e7d4iA41A4:375-681,A4:731-7765.1.4.05 → 5.1 → 5.1.4
18A4e7d4iA42A4:29-374WD405 → 5.1 → 5.1.4
19A5e7d4iA51A5:434-557Utp12109 → 109.54 → 109.54.1
20A5e7d4iA52A5:3-3725.1.5.05 → 5.1 → 5.1.5
21A9e7d4iA91A9:389-516109.54.1.0109 → 109.54 → 109.54.1
22AEe7d4iAE1AE:3-421U3snoRNP10109 → 109.4 → 109.4.1
23AFe7d4iAF1AF:2-387WD405 → 5.1 → 5.1.5
24AFe7d4iAF2AF:388-512UTP15_C109 → 109.54 → 109.54.1
25B1e7d4iB11B1:343-631,B1:675-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
26B1e7d4iB12B1:735-856Utp12109 → 109.54 → 109.54.1
27B1e7d4iB13B1:2-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
28B2e7d4iB21B2:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
29B2e7d4iB22B2:5-385WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
30B2e7d4iB23B2:745-917Utp12109 → 109.54 → 109.54.1
31B3e7d4iB31B3:282-651WD405 → 5.1 → 5.1.4
32B3e7d4iB32B3:652-817Utp13109 → 109.54 → 109.54.1
33B3e7d4iB33B3:3-281WD405 → 5.1 → 5.1.3
34B6e7d4iB61B6:1-196U3_assoc_6, HAT_PRP39_N109 → 109.4 → 109.4.1
35B8e7d4iB81B8:235-591WD405 → 5.1 → 5.1.4
36BEe7d4iBE1BE:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
37BEe7d4iBE2BE:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
38C4e7d4iC41C4:131-162,C4:197-291EXOSC12 → 2.1 → 2.1.1
39C4e7d4iC42C4:8-67,C4:105-113CSL4_N325 → 325.1 → 325.1.8
40M3e7d4iM31M3:4-185RNase_PH212 → 212.1 → 212.1.1
41M3e7d4iM32M3:183-248245.1.1.0245 → 245.1 → 245.1.1
42M4e7d4iM41M4:578-608,M4:874-910101.1.2.0101 → 101.1 → 101.1.2
43M4e7d4iM42M4:4-17,M4:80-323DEAD2004 → 2004.1 → 2004.1.1
44M4e7d4iM43M4:609-674,M4:803-8733324.1.1.23324 → 3324.1 → 3324.1.1
45M4e7d4iM44M4:911-1073DSHCT4156 → 4156.1 → 4156.1.1
46M4e7d4iM45M4:324-361,M4:392-577Helicase_C2004 → 2004.1 → 2004.1.1
47M4e7d4iM46M4:675-802MTR4_beta-barrel4 → 4.1 → 4.1.1
48R0e7d4iR01R0:152-237KH_6327 → 327.11 → 327.11.2
49R0e7d4iR02R0:61-151RRP40_S12 → 2.1 → 2.1.1
50R0e7d4iR03R0:1-60Rrp40_N325 → 325.1 → 325.1.8
51R1e7d4iR11R1:1-152RNase_PH212 → 212.1 → 212.1.1
52R1e7d4iR12R1:153-244RNase_PH_C245 → 245.1 → 245.1.1
53R2e7d4iR21R2:1-180212.1.1.0212 → 212.1 → 212.1.1
54R2e7d4iR22R2:181-265245.1.1.0245 → 245.1 → 245.1.1
55R3e7d4iR31R3:287-394245.1.1.0245 → 245.1 → 245.1.1
56R3e7d4iR32R3:8-286RNase_PH212 → 212.1 → 212.1.1
57r4e7d4ir41r4:196-245,r4:281-356KH_6327 → 327.11 → 327.11.2
58r4e7d4ir42r4:101-195RRP4_S12 → 2.1 → 2.1.1
59r4e7d4ir43r4:2-17,r4:50-100ECR1_N325 → 325.1 → 325.1.8
60R4e7d4iR41R4:494-910RNB2 → 2.9 → 2.9.1
61R4e7d4iR42R4:9-237PIN_42006 → 2006.1 → 2006.1.4
62R4e7d4iR43R4:237-329,R4:364-399Rrp44_CSD12 → 2.1 → 2.1.1
63R4e7d4iR44R4:400-493OB_Dis32 → 2.1 → 2.1.1
64R4e7d4iR45R4:911-1001Rrp44_S12 → 2.1 → 2.1.1
65R5e7d4iR51R5:3-186RNase_PH212 → 212.1 → 212.1.1
66R5e7d4iR52R5:187-301RNase_PH_C245 → 245.1 → 245.1.1
67r6e7d4ir61r6:5-106PMC2NT3910 → 3910.1 → 3910.1.1
68R6e7d4iR61R6:1-125RNase_PH212 → 212.1 → 212.1.1
69R6e7d4iR62R6:123-223RNase_PH_C245 → 245.1 → 245.1.1
70R7e7d4iR71R7:5-117Sas10_Utp33911 → 3911.1 → 3911.1.1
71RDe7d4iRD1RD:1192-1224,RD:1457-1721HAT_PRP39_N109 → 109.4 → 109.4.1
72REe7d4iRE1RE:100-356Nrap316 → 316.1 → 316.1.1
73REe7d4iRE2RE:699-905Nrap_D4316 → 316.1 → 316.1.1
74REe7d4iRE3RE:906-1091Nrap_D5102 → 102.1 → 102.1.3
75REe7d4iRE4RE:515-698Nrap_D3304 → 304.20 → 304.20.1
76REe7d4iRE5RE:1092-1237Nrap_D6304 → 304.20 → 304.20.1
77REe7d4iRE6RE:357-514Nrap_D2102 → 102.1 → 102.1.3
78RFe7d4iRF1RF:3-272RRP7,RRM_Rrp7304 → 304.9 → 304.9.1
79RGe7d4iRG1RG:29-251EMG12488 → 2488.1 → 2488.1.1
80RHe7d4iRH1RH:16-251EMG12488 → 2488.1 → 2488.1.1
81RJe7d4iRJ1RJ:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
82RJe7d4iRJ2RJ:929-1016RIBIOP_C1 → 1.1 → 1.1.7
83RJe7d4iRJ3RJ:818-928RIBIOP_C1 → 1.1 → 1.1.8
84RJe7d4iRJ4RJ:236-305,RJ:614-636,RJ:787-817AARP2CN1 → 1.1 → 1.1.7
85RKe7d4iRK1RK:7-182,RK:287-366RTC328 → 328.6 → 328.6.1
86RKe7d4iRK2RK:183-287RTC_insert2485 → 2485.2 → 2485.2.1
87RSe7d4iRS1RS:209-465Bystin109 → 109.4 → 109.4.1
88RTe7d4iRT1RT:178-271KH_PNO1_2nd327 → 327.11 → 327.11.2
89RTe7d4iRT2RT:36-45,RT:91-177KH_8327 → 327.11 → 327.11.2
90RZe7d4iRZ1RZ:1101-11552.1.1.02 → 2.1 → 2.1.1
91RZe7d4iRZ2RZ:587-836Helicase_C2004 → 2004.1 → 2004.1.1
92RZe7d4iRZ3RZ:908-1100HA2_C4156 → 4156.1 → 4156.1.1
93RZe7d4iRZ4RZ:373-586DEAD2004 → 2004.1 → 2004.1.1
94RZe7d4iRZ5RZ:837-907HA2_N101 → 101.1 → 101.1.2
95RZe7d4iRZ6RZ:1156-12532.1.1.02 → 2.1 → 2.1.1
96Sce7d4iSc1Sc:3-82Ribosomal_S27e375 → 375.1 → 375.1.1
97SCe7d4iSC1SC:114-223Ribosomal_S3Ae230 → 230.6 → 230.6.1
98SCe7d4iSC2SC:3-113,SC:224-244Ribosomal_S3Ae239 → 239.5 → 239.5.1
99Sde7d4iSd1Sd:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
100SFe7d4iSF1SF:9-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
101SFe7d4iSF2SF:176-255KOW,40S_S4_C4 → 4.1 → 4.1.1
102SFe7d4iSF3SF:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
103SGe7d4iSG1SG:13-225Ribosomal_S7167 → 167.1 → 167.1.1
104SHe7d4iSH1SH:1-62,SH:99-218Ribosomal_S6e239 → 239.1 → 239.1.1
105SIe7d4iSI1SI:6-119Ribosomal_S7e327 → 327.18 → 327.18.1
106SIe7d4iSI2SI:116-189Ribosomal_S7e327 → 327.18 → 327.18.1
107SJe7d4iSJ1SJ:22-121,SJ:153-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
108SKe7d4iSK1SK:9-182Ribosomal_S4,S4221 → 221.1 → 221.1.2
109SMe7d4iSM1SM:6-142Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
110SOe7d4iSO1SO:9-82Ribosomal_S13_N101 → 101.40 → 101.40.1
111SOe7d4iSO2SO:83-142Ribosomal_S15616 → 616.1 → 616.1.1
112SPe7d4iSP1SP:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
113SRe7d4iSR1SR:3-127Ribosomal_S9212 → 212.1 → 212.1.1
114STe7d4iST1ST:2-124Ribosomal_S13102 → 102.2 → 102.2.1
115SUe7d4iSU1SU:4-141Ribosomal_S19e101 → 101.1 → 101.1.2
116SXe7d4iSX1SX:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
117SXe7d4iSX2SX:4-66Ribosomal_S8320 → 320.2 → 320.2.1
118SYe7d4iSY1SY:41-144Ribosom_S12_S232 → 2.1 → 2.1.1
119SZe7d4iSZ1SZ:4-126Ribosomal_S24e304 → 304.109 → 304.109.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors