PDB 7D4I
ELECTRON MICROSCOPY0 chains119 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 3Bview chain
1 domainChain 3Cview chain
1 domainChain 3Dview chain
3 domainsChain 3Fview chain
1 domainChain 3Gview chain
1 domainChain 3Hview chain
1 domainChain 5Cview chain
1 domainChain 5Fview chain
1 domainChain 5Gview chain
1 domainChain 5Iview chain
1 domainChain 5Kview chain
1 domainChain A4view chain
2 domainsChain A5view chain
2 domainsChain A9view chain
1 domainChain AEview chain
1 domainChain AFview chain
2 domainsChain B2view chain
3 domainsChain B3view chain
3 domainsChain B6view chain
1 domainChain B8view chain
1 domainChain BEview chain
2 domainsChain M3view chain
2 domainsChain M4view chain
6 domainsChain R0view chain
3 domainsChain R1view chain
2 domainsChain R2view chain
2 domainsChain R3view chain
2 domainsChain r4view chain
3 domainsChain R4view chain
5 domainsChain R5view chain
2 domainsChain r6view chain
1 domainChain R6view chain
2 domainsChain R7view chain
1 domainChain RDview chain
1 domainChain REview chain
6 domainsChain RFview chain
1 domainChain RGview chain
1 domainChain RHview chain
1 domainChain RJview chain
4 domainsChain RKview chain
2 domainsChain RSview chain
1 domainChain RTview chain
2 domainsChain RZview chain
6 domainsChain Scview chain
1 domainChain SCview chain
2 domainsChain Sdview chain
1 domainChain SFview chain
3 domainsChain SGview chain
1 domainChain SHview chain
1 domainChain SIview chain
2 domainsChain SJview chain
1 domainChain SKview chain
1 domainChain SMview chain
1 domainChain SOview chain
2 domainsChain SPview chain
1 domainChain SRview chain
1 domainChain STview chain
1 domainChain SUview chain
1 domainChain SXview chain
2 domainsChain SYview chain
1 domainChain SZview chain
1 domainAll Domains (119)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 3B | e7d4i3B1 | 3B:79-326 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 2 | 3C | e7d4i3C1 | 3C:86-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 3 | 3D | e7d4i3D1 | 3D:166-300 | Nop | 606 → 606.1 → 606.1.1 |
| 4 | 3D | e7d4i3D2 | 3D:299-415 | Nop | 102 → 102.1 → 102.1.4 |
| 5 | 3D | e7d4i3D3 | 3D:3-165 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 6 | 3E | e7d4i3E1 | 3E:3-18,3E:38-154 | NOP5NT, Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 7 | 3E | e7d4i3E2 | 3E:285-403 | Nop | 102 → 102.1 → 102.1.4 |
| 8 | 3E | e7d4i3E3 | 3E:155-284 | Nop | 606 → 606.1 → 606.1.1 |
| 9 | 3F | e7d4i3F1 | 3F:113-570 | WD40 | 5 → 5.1 → 5.1.5 |
| 10 | 3G | e7d4i3G1 | 3G:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 11 | 3H | e7d4i3H1 | 3H:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 12 | 5C | e7d4i5C1 | 5C:58-473 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 13 | 5F | e7d4i5F1 | 5F:2-183 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 14 | 5G | e7d4i5G1 | 5G:84-267 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 15 | 5I | e7d4i5I1 | 5I:65-379 | WD40, Beta-prop_NUP159_NUP214 | 5 → 5.1 → 5.1.4 |
| 16 | 5K | e7d4i5K1 | 5K:40-189 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 17 | A4 | e7d4iA41 | A4:375-681,A4:731-776 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 18 | A4 | e7d4iA42 | A4:29-374 | WD40 | 5 → 5.1 → 5.1.4 |
| 19 | A5 | e7d4iA51 | A5:434-557 | Utp12 | 109 → 109.54 → 109.54.1 |
| 20 | A5 | e7d4iA52 | A5:3-372 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 21 | A9 | e7d4iA91 | A9:389-516 | 109.54.1.0 | 109 → 109.54 → 109.54.1 |
| 22 | AE | e7d4iAE1 | AE:3-421 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 23 | AF | e7d4iAF1 | AF:2-387 | WD40 | 5 → 5.1 → 5.1.5 |
| 24 | AF | e7d4iAF2 | AF:388-512 | UTP15_C | 109 → 109.54 → 109.54.1 |
| 25 | B1 | e7d4iB11 | B1:343-631,B1:675-734 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 26 | B1 | e7d4iB12 | B1:735-856 | Utp12 | 109 → 109.54 → 109.54.1 |
| 27 | B1 | e7d4iB13 | B1:2-343 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 28 | B2 | e7d4iB21 | B2:386-687 | WD40, Beta-prop_WDR3_2nd | 5 → 5.1 → 5.1.4 |
| 29 | B2 | e7d4iB22 | B2:5-385 | WD40, Beta-prop_WDR3_1st | 5 → 5.1 → 5.1.4 |
| 30 | B2 | e7d4iB23 | B2:745-917 | Utp12 | 109 → 109.54 → 109.54.1 |
| 31 | B3 | e7d4iB31 | B3:282-651 | WD40 | 5 → 5.1 → 5.1.4 |
| 32 | B3 | e7d4iB32 | B3:652-817 | Utp13 | 109 → 109.54 → 109.54.1 |
| 33 | B3 | e7d4iB33 | B3:3-281 | WD40 | 5 → 5.1 → 5.1.3 |
| 34 | B6 | e7d4iB61 | B6:1-196 | U3_assoc_6, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 35 | B8 | e7d4iB81 | B8:235-591 | WD40 | 5 → 5.1 → 5.1.4 |
| 36 | BE | e7d4iBE1 | BE:350-684 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 37 | BE | e7d4iBE2 | BE:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 38 | C4 | e7d4iC41 | C4:131-162,C4:197-291 | EXOSC1 | 2 → 2.1 → 2.1.1 |
| 39 | C4 | e7d4iC42 | C4:8-67,C4:105-113 | CSL4_N | 325 → 325.1 → 325.1.8 |
| 40 | M3 | e7d4iM31 | M3:4-185 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 41 | M3 | e7d4iM32 | M3:183-248 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 42 | M4 | e7d4iM41 | M4:578-608,M4:874-910 | 101.1.2.0 | 101 → 101.1 → 101.1.2 |
| 43 | M4 | e7d4iM42 | M4:4-17,M4:80-323 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 44 | M4 | e7d4iM43 | M4:609-674,M4:803-873 | 3324.1.1.2 | 3324 → 3324.1 → 3324.1.1 |
| 45 | M4 | e7d4iM44 | M4:911-1073 | DSHCT | 4156 → 4156.1 → 4156.1.1 |
| 46 | M4 | e7d4iM45 | M4:324-361,M4:392-577 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 47 | M4 | e7d4iM46 | M4:675-802 | MTR4_beta-barrel | 4 → 4.1 → 4.1.1 |
| 48 | R0 | e7d4iR01 | R0:152-237 | KH_6 | 327 → 327.11 → 327.11.2 |
| 49 | R0 | e7d4iR02 | R0:61-151 | RRP40_S1 | 2 → 2.1 → 2.1.1 |
| 50 | R0 | e7d4iR03 | R0:1-60 | Rrp40_N | 325 → 325.1 → 325.1.8 |
| 51 | R1 | e7d4iR11 | R1:1-152 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 52 | R1 | e7d4iR12 | R1:153-244 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 53 | R2 | e7d4iR21 | R2:1-180 | 212.1.1.0 | 212 → 212.1 → 212.1.1 |
| 54 | R2 | e7d4iR22 | R2:181-265 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 55 | R3 | e7d4iR31 | R3:287-394 | 245.1.1.0 | 245 → 245.1 → 245.1.1 |
| 56 | R3 | e7d4iR32 | R3:8-286 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 57 | r4 | e7d4ir41 | r4:196-245,r4:281-356 | KH_6 | 327 → 327.11 → 327.11.2 |
| 58 | r4 | e7d4ir42 | r4:101-195 | RRP4_S1 | 2 → 2.1 → 2.1.1 |
| 59 | r4 | e7d4ir43 | r4:2-17,r4:50-100 | ECR1_N | 325 → 325.1 → 325.1.8 |
| 60 | R4 | e7d4iR41 | R4:494-910 | RNB | 2 → 2.9 → 2.9.1 |
| 61 | R4 | e7d4iR42 | R4:9-237 | PIN_4 | 2006 → 2006.1 → 2006.1.4 |
| 62 | R4 | e7d4iR43 | R4:237-329,R4:364-399 | Rrp44_CSD1 | 2 → 2.1 → 2.1.1 |
| 63 | R4 | e7d4iR44 | R4:400-493 | OB_Dis3 | 2 → 2.1 → 2.1.1 |
| 64 | R4 | e7d4iR45 | R4:911-1001 | Rrp44_S1 | 2 → 2.1 → 2.1.1 |
| 65 | R5 | e7d4iR51 | R5:3-186 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 66 | R5 | e7d4iR52 | R5:187-301 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 67 | r6 | e7d4ir61 | r6:5-106 | PMC2NT | 3910 → 3910.1 → 3910.1.1 |
| 68 | R6 | e7d4iR61 | R6:1-125 | RNase_PH | 212 → 212.1 → 212.1.1 |
| 69 | R6 | e7d4iR62 | R6:123-223 | RNase_PH_C | 245 → 245.1 → 245.1.1 |
| 70 | R7 | e7d4iR71 | R7:5-117 | Sas10_Utp3 | 3911 → 3911.1 → 3911.1.1 |
| 71 | RD | e7d4iRD1 | RD:1192-1224,RD:1457-1721 | HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 72 | RE | e7d4iRE1 | RE:100-356 | Nrap | 316 → 316.1 → 316.1.1 |
| 73 | RE | e7d4iRE2 | RE:699-905 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 74 | RE | e7d4iRE3 | RE:906-1091 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 75 | RE | e7d4iRE4 | RE:515-698 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 76 | RE | e7d4iRE5 | RE:1092-1237 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 77 | RE | e7d4iRE6 | RE:357-514 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 78 | RF | e7d4iRF1 | RF:3-272 | RRP7,RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 79 | RG | e7d4iRG1 | RG:29-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 80 | RH | e7d4iRH1 | RH:16-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 81 | RJ | e7d4iRJ1 | RJ:54-235 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 82 | RJ | e7d4iRJ2 | RJ:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 83 | RJ | e7d4iRJ3 | RJ:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 84 | RJ | e7d4iRJ4 | RJ:236-305,RJ:614-636,RJ:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 85 | RK | e7d4iRK1 | RK:7-182,RK:287-366 | RTC | 328 → 328.6 → 328.6.1 |
| 86 | RK | e7d4iRK2 | RK:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 87 | RS | e7d4iRS1 | RS:209-465 | Bystin | 109 → 109.4 → 109.4.1 |
| 88 | RT | e7d4iRT1 | RT:178-271 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 89 | RT | e7d4iRT2 | RT:36-45,RT:91-177 | KH_8 | 327 → 327.11 → 327.11.2 |
| 90 | RZ | e7d4iRZ1 | RZ:1101-1155 | 2.1.1.0 | 2 → 2.1 → 2.1.1 |
| 91 | RZ | e7d4iRZ2 | RZ:587-836 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 92 | RZ | e7d4iRZ3 | RZ:908-1100 | HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 93 | RZ | e7d4iRZ4 | RZ:373-586 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 94 | RZ | e7d4iRZ5 | RZ:837-907 | HA2_N | 101 → 101.1 → 101.1.2 |
| 95 | RZ | e7d4iRZ6 | RZ:1156-1253 | 2.1.1.0 | 2 → 2.1 → 2.1.1 |
| 96 | Sc | e7d4iSc1 | Sc:3-82 | Ribosomal_S27e | 375 → 375.1 → 375.1.1 |
| 97 | SC | e7d4iSC1 | SC:114-223 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 98 | SC | e7d4iSC2 | SC:3-113,SC:224-244 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 99 | Sd | e7d4iSd1 | Sd:5-67 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 100 | SF | e7d4iSF1 | SF:9-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 101 | SF | e7d4iSF2 | SF:176-255 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 102 | SF | e7d4iSF3 | SF:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 103 | SG | e7d4iSG1 | SG:13-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 104 | SH | e7d4iSH1 | SH:1-62,SH:99-218 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 105 | SI | e7d4iSI1 | SI:6-119 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 106 | SI | e7d4iSI2 | SI:116-189 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 107 | SJ | e7d4iSJ1 | SJ:22-121,SJ:153-200 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 108 | SK | e7d4iSK1 | SK:9-182 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 109 | SM | e7d4iSM1 | SM:6-142 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 110 | SO | e7d4iSO1 | SO:9-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 111 | SO | e7d4iSO2 | SO:83-142 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 112 | SP | e7d4iSP1 | SP:11-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 113 | SR | e7d4iSR1 | SR:3-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 114 | ST | e7d4iST1 | ST:2-124 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 115 | SU | e7d4iSU1 | SU:4-141 | Ribosomal_S19e | 101 → 101.1 → 101.1.2 |
| 116 | SX | e7d4iSX1 | SX:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 117 | SX | e7d4iSX2 | SX:4-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 118 | SY | e7d4iSY1 | SY:41-144 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 119 | SZ | e7d4iSZ1 | SZ:4-126 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors