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PDB 7D5S

ELECTRON MICROSCOPY0 chains70 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (70)

#ChainDomain IDRangeFamilyClassification
13Be7d5s3B13B:82-326Fibrillarin2003 → 2003.1 → 2003.1.5
23Ce7d5s3C13C:86-322Fibrillarin2003 → 2003.1 → 2003.1.5
33De7d5s3D13D:166-300Nop606 → 606.1 → 606.1.1
43De7d5s3D23D:301-336,3D:370-415Nop102 → 102.1 → 102.1.4
53De7d5s3D33D:3-165NOP5NT3407 → 3407.1 → 3407.1.1
63Ee7d5s3E13E:3-18,3E:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
73Ee7d5s3E23E:285-403Nop102 → 102.1 → 102.1.4
83Ee7d5s3E33E:155-284Nop606 → 606.1 → 606.1.1
93Fe7d5s3F13F:130-570WD405 → 5.1 → 5.1.5
103Ge7d5s3G13G:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
113He7d5s3H13H:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
125Ce7d5s5C15C:58-473WD40,BING4CT5 → 5.1 → 5.1.5
135Fe7d5s5F15F:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
145Ge7d5s5G15G:84-267Brix7502 → 7502.1 → 7502.1.1
155Ie7d5s5I15I:65-379WD40, Beta-prop_NUP159_NUP2145 → 5.1 → 5.1.4
165Ke7d5s5K15K:57-182Fcf12006 → 2006.1 → 2006.1.4
17A4e7d5sA41A4:375-681,A4:731-7765.1.4.05 → 5.1 → 5.1.4
18A4e7d5sA42A4:29-374WD405 → 5.1 → 5.1.4
19A5e7d5sA51A5:434-557Utp12109 → 109.54 → 109.54.1
20A5e7d5sA52A5:3-3725.1.5.05 → 5.1 → 5.1.5
21A9e7d5sA91A9:389-516109.54.1.0109 → 109.54 → 109.54.1
22AEe7d5sAE1AE:3-421U3snoRNP10109 → 109.4 → 109.4.1
23AFe7d5sAF1AF:34-364WD405 → 5.1 → 5.1.5
24AFe7d5sAF2AF:2-33,AF:388-512UTP15_C109 → 109.54 → 109.54.1
25B1e7d5sB11B1:2-223,B1:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
26B1e7d5sB12B1:735-856Utp12109 → 109.54 → 109.54.1
27B1e7d5sB13B1:343-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
28B2e7d5sB21B2:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
29B2e7d5sB22B2:745-921Utp12109 → 109.54 → 109.54.1
30B2e7d5sB23B2:5-385WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
31B3e7d5sB31B3:284-651WD405 → 5.1 → 5.1.4
32B3e7d5sB32B3:652-817Utp13109 → 109.54 → 109.54.1
33B3e7d5sB33B3:7-283WD405 → 5.1 → 5.1.3
34B6e7d5sB61B6:1-196U3_assoc_6, HAT_PRP39_N109 → 109.4 → 109.4.1
35B8e7d5sB81B8:235-591WD405 → 5.1 → 5.1.4
36BEe7d5sBE1BE:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
37BEe7d5sBE2BE:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
38RCe7d5sRC1RC:120-212KRR1-like_KH2327 → 327.11 → 327.11.2
39RCe7d5sRC2RC:38-119KH_8327 → 327.11 → 327.11.2
40RDe7d5sRD1RD:1457-1721HAT_PRP39_N109 → 109.4 → 109.4.1
41REe7d5sRE1RE:100-356Nrap316 → 316.1 → 316.1.1
42REe7d5sRE2RE:699-905Nrap_D4316 → 316.1 → 316.1.1
43REe7d5sRE3RE:906-982,RE:1012-1091Nrap_D5102 → 102.1 → 102.1.3
44REe7d5sRE4RE:515-698Nrap_D3304 → 304.20 → 304.20.1
45REe7d5sRE5RE:1092-1237Nrap_D6304 → 304.20 → 304.20.1
46REe7d5sRE6RE:357-514Nrap_D2102 → 102.1 → 102.1.3
47RFe7d5sRF1RF:3-189RRM_Rrp7304 → 304.9 → 304.9.1
48RGe7d5sRG1RG:29-251EMG12488 → 2488.1 → 2488.1.1
49RHe7d5sRH1RH:16-251EMG12488 → 2488.1 → 2488.1.1
50RIe7d5sRI1RI:6-61,RI:186-257Ribosomal_L1898 → 898.1 → 898.1.1
51RIe7d5sRI2RI:62-185Ribosomal_L12007 → 2007.25 → 2007.25.1
52RJe7d5sRJ1RJ:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
53RJe7d5sRJ2RJ:929-1016RIBIOP_C1 → 1.1 → 1.1.7
54RJe7d5sRJ3RJ:818-928RIBIOP_C1 → 1.1 → 1.1.8
55RJe7d5sRJ4RJ:236-305,RJ:614-636,RJ:787-817AARP2CN1 → 1.1 → 1.1.7
56RKe7d5sRK1RK:183-287RTC_insert2485 → 2485.2 → 2485.2.1
57RKe7d5sRK2RK:7-182,RK:287-366RTC328 → 328.6 → 328.6.1
58RSe7d5sRS1RS:209-465Bystin109 → 109.4 → 109.4.1
59RTe7d5sRT1RT:178-274KH_PNO1_2nd327 → 327.11 → 327.11.2
60RTe7d5sRT2RT:95-177KH_8327 → 327.11 → 327.11.2
61Sde7d5sSd1Sd:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
62SGe7d5sSG1SG:13-225Ribosomal_S7167 → 167.1 → 167.1.1
63SKe7d5sSK1SK:12-182Ribosomal_S4,S4221 → 221.1 → 221.1.2
64SNe7d5sSN1SN:25-143Ribosomal_L7Ae301 → 301.1 → 301.1.1
65SOe7d5sSO1SO:9-82Ribosomal_S13_N101 → 101.40 → 101.40.1
66SOe7d5sSO2SO:83-142Ribosomal_S15616 → 616.1 → 616.1.1
67SPe7d5sSP1SP:11-128Ribosomal_S112484 → 2484.1 → 2484.1.1
68SRe7d5sSR1SR:3-127Ribosomal_S9212 → 212.1 → 212.1.1
69STe7d5sST1ST:2-80,ST:101-129Ribosomal_S13102 → 102.2 → 102.2.1
70SYe7d5sSY1SY:42-144Ribosom_S12_S232 → 2.1 → 2.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors