PDB 7D5S
ELECTRON MICROSCOPY0 chains70 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
Loading viewer...
Domains by Chain
Chain 3Bview chain
1 domainChain 3Cview chain
1 domainChain 3Fview chain
1 domainChain 3Gview chain
1 domainChain 3Hview chain
1 domainChain 5Cview chain
1 domainChain 5Fview chain
1 domainChain 5Gview chain
1 domainChain 5Iview chain
1 domainChain 5Kview chain
1 domainChain A4view chain
2 domainsChain A5view chain
2 domainsChain A9view chain
1 domainChain AEview chain
1 domainChain AFview chain
2 domainsChain B2view chain
3 domainsChain B3view chain
3 domainsChain B6view chain
1 domainChain B8view chain
1 domainChain BEview chain
2 domainsChain RCview chain
2 domainsChain RDview chain
1 domainChain REview chain
6 domainsChain RFview chain
1 domainChain RGview chain
1 domainChain RHview chain
1 domainChain RIview chain
2 domainsChain RJview chain
4 domainsChain RKview chain
2 domainsChain RSview chain
1 domainChain RTview chain
2 domainsChain Sdview chain
1 domainChain SGview chain
1 domainChain SKview chain
1 domainChain SNview chain
1 domainChain SOview chain
2 domainsChain SPview chain
1 domainChain SRview chain
1 domainChain STview chain
1 domainChain SYview chain
1 domainAll Domains (70)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 3B | e7d5s3B1 | 3B:82-326 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 2 | 3C | e7d5s3C1 | 3C:86-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 3 | 3D | e7d5s3D1 | 3D:166-300 | Nop | 606 → 606.1 → 606.1.1 |
| 4 | 3D | e7d5s3D2 | 3D:301-336,3D:370-415 | Nop | 102 → 102.1 → 102.1.4 |
| 5 | 3D | e7d5s3D3 | 3D:3-165 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 6 | 3E | e7d5s3E1 | 3E:3-18,3E:38-154 | NOP5NT, Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 7 | 3E | e7d5s3E2 | 3E:285-403 | Nop | 102 → 102.1 → 102.1.4 |
| 8 | 3E | e7d5s3E3 | 3E:155-284 | Nop | 606 → 606.1 → 606.1.1 |
| 9 | 3F | e7d5s3F1 | 3F:130-570 | WD40 | 5 → 5.1 → 5.1.5 |
| 10 | 3G | e7d5s3G1 | 3G:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 11 | 3H | e7d5s3H1 | 3H:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 12 | 5C | e7d5s5C1 | 5C:58-473 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 13 | 5F | e7d5s5F1 | 5F:2-183 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 14 | 5G | e7d5s5G1 | 5G:84-267 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 15 | 5I | e7d5s5I1 | 5I:65-379 | WD40, Beta-prop_NUP159_NUP214 | 5 → 5.1 → 5.1.4 |
| 16 | 5K | e7d5s5K1 | 5K:57-182 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 17 | A4 | e7d5sA41 | A4:375-681,A4:731-776 | 5.1.4.0 | 5 → 5.1 → 5.1.4 |
| 18 | A4 | e7d5sA42 | A4:29-374 | WD40 | 5 → 5.1 → 5.1.4 |
| 19 | A5 | e7d5sA51 | A5:434-557 | Utp12 | 109 → 109.54 → 109.54.1 |
| 20 | A5 | e7d5sA52 | A5:3-372 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 21 | A9 | e7d5sA91 | A9:389-516 | 109.54.1.0 | 109 → 109.54 → 109.54.1 |
| 22 | AE | e7d5sAE1 | AE:3-421 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 23 | AF | e7d5sAF1 | AF:34-364 | WD40 | 5 → 5.1 → 5.1.5 |
| 24 | AF | e7d5sAF2 | AF:2-33,AF:388-512 | UTP15_C | 109 → 109.54 → 109.54.1 |
| 25 | B1 | e7d5sB11 | B1:2-223,B1:245-343 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 26 | B1 | e7d5sB12 | B1:735-856 | Utp12 | 109 → 109.54 → 109.54.1 |
| 27 | B1 | e7d5sB13 | B1:343-734 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 28 | B2 | e7d5sB21 | B2:386-687 | WD40, Beta-prop_WDR3_2nd | 5 → 5.1 → 5.1.4 |
| 29 | B2 | e7d5sB22 | B2:745-921 | Utp12 | 109 → 109.54 → 109.54.1 |
| 30 | B2 | e7d5sB23 | B2:5-385 | WD40, Beta-prop_WDR3_1st | 5 → 5.1 → 5.1.4 |
| 31 | B3 | e7d5sB31 | B3:284-651 | WD40 | 5 → 5.1 → 5.1.4 |
| 32 | B3 | e7d5sB32 | B3:652-817 | Utp13 | 109 → 109.54 → 109.54.1 |
| 33 | B3 | e7d5sB33 | B3:7-283 | WD40 | 5 → 5.1 → 5.1.3 |
| 34 | B6 | e7d5sB61 | B6:1-196 | U3_assoc_6, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 35 | B8 | e7d5sB81 | B8:235-591 | WD40 | 5 → 5.1 → 5.1.4 |
| 36 | BE | e7d5sBE1 | BE:350-684 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 37 | BE | e7d5sBE2 | BE:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 38 | RC | e7d5sRC1 | RC:120-212 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 39 | RC | e7d5sRC2 | RC:38-119 | KH_8 | 327 → 327.11 → 327.11.2 |
| 40 | RD | e7d5sRD1 | RD:1457-1721 | HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 41 | RE | e7d5sRE1 | RE:100-356 | Nrap | 316 → 316.1 → 316.1.1 |
| 42 | RE | e7d5sRE2 | RE:699-905 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 43 | RE | e7d5sRE3 | RE:906-982,RE:1012-1091 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 44 | RE | e7d5sRE4 | RE:515-698 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 45 | RE | e7d5sRE5 | RE:1092-1237 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 46 | RE | e7d5sRE6 | RE:357-514 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 47 | RF | e7d5sRF1 | RF:3-189 | RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 48 | RG | e7d5sRG1 | RG:29-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 49 | RH | e7d5sRH1 | RH:16-251 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 50 | RI | e7d5sRI1 | RI:6-61,RI:186-257 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
| 51 | RI | e7d5sRI2 | RI:62-185 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
| 52 | RJ | e7d5sRJ1 | RJ:54-235 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 53 | RJ | e7d5sRJ2 | RJ:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 54 | RJ | e7d5sRJ3 | RJ:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 55 | RJ | e7d5sRJ4 | RJ:236-305,RJ:614-636,RJ:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 56 | RK | e7d5sRK1 | RK:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 57 | RK | e7d5sRK2 | RK:7-182,RK:287-366 | RTC | 328 → 328.6 → 328.6.1 |
| 58 | RS | e7d5sRS1 | RS:209-465 | Bystin | 109 → 109.4 → 109.4.1 |
| 59 | RT | e7d5sRT1 | RT:178-274 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 60 | RT | e7d5sRT2 | RT:95-177 | KH_8 | 327 → 327.11 → 327.11.2 |
| 61 | Sd | e7d5sSd1 | Sd:5-67 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 62 | SG | e7d5sSG1 | SG:13-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 63 | SK | e7d5sSK1 | SK:12-182 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 64 | SN | e7d5sSN1 | SN:25-143 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 65 | SO | e7d5sSO1 | SO:9-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 66 | SO | e7d5sSO2 | SO:83-142 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 67 | SP | e7d5sSP1 | SP:11-128 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 68 | SR | e7d5sSR1 | SR:3-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 69 | ST | e7d5sST1 | ST:2-80,ST:101-129 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 70 | SY | e7d5sSY1 | SY:42-144 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors