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PDB 7D5T

ELECTRON MICROSCOPY0 chains75 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (75)

#ChainDomain IDRangeFamilyClassification
13Be7d5t3B13B:79-326Fibrillarin2003 → 2003.1 → 2003.1.5
23Ce7d5t3C13C:86-322Fibrillarin2003 → 2003.1 → 2003.1.5
33De7d5t3D13D:166-300Nop606 → 606.1 → 606.1.1
43De7d5t3D23D:299-340,3D:370-415Nop102 → 102.1 → 102.1.4
53De7d5t3D33D:3-165NOP5NT3407 → 3407.1 → 3407.1.1
63Ee7d5t3E13E:3-18,3E:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
73Ee7d5t3E23E:285-403Nop102 → 102.1 → 102.1.4
83Ee7d5t3E33E:155-284Nop606 → 606.1 → 606.1.1
93Fe7d5t3F13F:113-570WD405 → 5.1 → 5.1.5
103Ge7d5t3G13G:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
113He7d5t3H13H:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
125Ce7d5t5C15C:58-473WD40,BING4CT5 → 5.1 → 5.1.5
135Fe7d5t5F15F:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
145Ge7d5t5G15G:84-267Brix7502 → 7502.1 → 7502.1.1
155Ie7d5t5I15I:65-379WD40, Beta-prop_NUP159_NUP2145 → 5.1 → 5.1.4
165Ke7d5t5K15K:40-189Fcf12006 → 2006.1 → 2006.1.4
17A5e7d5tA51A5:2-3305.1.5.05 → 5.1 → 5.1.5
18AEe7d5tAE1AE:2-432U3snoRNP10109 → 109.4 → 109.4.1
19B1e7d5tB11B1:2-223,B1:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
20B1e7d5tB12B1:343-631,B1:675-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
21B1e7d5tB13B1:735-856Utp12109 → 109.54 → 109.54.1
22B2e7d5tB21B2:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
23B2e7d5tB22B2:5-385WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
24B2e7d5tB23B2:745-917Utp12109 → 109.54 → 109.54.1
25B3e7d5tB31B3:282-651WD405 → 5.1 → 5.1.4
26B3e7d5tB32B3:652-817Utp13109 → 109.54 → 109.54.1
27B3e7d5tB33B3:3-281WD405 → 5.1 → 5.1.3
28B6e7d5tB61B6:1-196U3_assoc_6, HAT_PRP39_N109 → 109.4 → 109.4.1
29B8e7d5tB81B8:235-591WD405 → 5.1 → 5.1.4
30BEe7d5tBE1BE:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
31BEe7d5tBE2BE:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
32RDe7d5tRD1RD:1192-1224,RD:1457-1721HAT_PRP39_N109 → 109.4 → 109.4.1
33REe7d5tRE1RE:100-356Nrap316 → 316.1 → 316.1.1
34REe7d5tRE2RE:699-905Nrap_D4316 → 316.1 → 316.1.1
35REe7d5tRE3RE:906-982,RE:1012-1091Nrap_D5102 → 102.1 → 102.1.3
36REe7d5tRE4RE:515-698Nrap_D3304 → 304.20 → 304.20.1
37REe7d5tRE5RE:1092-1237Nrap_D6304 → 304.20 → 304.20.1
38REe7d5tRE6RE:357-514Nrap_D2102 → 102.1 → 102.1.3
39RFe7d5tRF1RF:3-272RRP7,RRM_Rrp7304 → 304.9 → 304.9.1
40RJe7d5tRJ1RJ:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
41RJe7d5tRJ2RJ:929-1016RIBIOP_C1 → 1.1 → 1.1.7
42RJe7d5tRJ3RJ:818-928RIBIOP_C1 → 1.1 → 1.1.8
43RJe7d5tRJ4RJ:236-305,RJ:614-636,RJ:787-817AARP2CN1 → 1.1 → 1.1.7
44RKe7d5tRK1RK:183-287RTC_insert2485 → 2485.2 → 2485.2.1
45RKe7d5tRK2RK:7-182,RK:287-366RTC328 → 328.6 → 328.6.1
46RTe7d5tRT1RT:178-271KH_PNO1_2nd327 → 327.11 → 327.11.2
47RTe7d5tRT2RT:36-45,RT:90-177KH_8327 → 327.11 → 327.11.2
48RZe7d5tRZ1RZ:373-586DEAD2004 → 2004.1 → 2004.1.1
49RZe7d5tRZ2RZ:908-947,RZ:977-1100HA2_C4156 → 4156.1 → 4156.1.1
50RZe7d5tRZ3RZ:587-836Helicase_C2004 → 2004.1 → 2004.1.1
51RZe7d5tRZ4RZ:1101-11552.1.1.02 → 2.1 → 2.1.1
52RZe7d5tRZ5RZ:837-907HA2_N101 → 101.1 → 101.1.2
53RZe7d5tRZ6RZ:1156-12532.1.1.02 → 2.1 → 2.1.1
54Sce7d5tSc1Sc:3-82Ribosomal_S27e375 → 375.1 → 375.1.1
55SCe7d5tSC1SC:114-223Ribosomal_S3Ae230 → 230.6 → 230.6.1
56SCe7d5tSC2SC:3-113,SC:224-244Ribosomal_S3Ae239 → 239.5 → 239.5.1
57Sde7d5tSd1Sd:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
58SFe7d5tSF1SF:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
59SFe7d5tSF2SF:9-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
60SFe7d5tSF3SF:176-255KOW,40S_S4_C4 → 4.1 → 4.1.1
61SGe7d5tSG1SG:13-225Ribosomal_S7167 → 167.1 → 167.1.1
62SHe7d5tSH1SH:1-62,SH:99-218Ribosomal_S6e239 → 239.1 → 239.1.1
63SIe7d5tSI1SI:6-96,SI:116-119Ribosomal_S7e327 → 327.18 → 327.18.1
64SIe7d5tSI2SI:116-189Ribosomal_S7e327 → 327.18 → 327.18.1
65SJe7d5tSJ1SJ:22-121,SJ:153-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
66SKe7d5tSK1SK:9-182Ribosomal_S4,S4221 → 221.1 → 221.1.2
67SMe7d5tSM1SM:6-142Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
68SOe7d5tSO1SO:9-82Ribosomal_S13_N101 → 101.40 → 101.40.1
69SOe7d5tSO2SO:83-142Ribosomal_S15616 → 616.1 → 616.1.1
70SPe7d5tSP1SP:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
71SRe7d5tSR1SR:3-127Ribosomal_S9212 → 212.1 → 212.1.1
72SXe7d5tSX1SX:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
73SXe7d5tSX2SX:4-66Ribosomal_S8320 → 320.2 → 320.2.1
74SYe7d5tSY1SY:41-144Ribosom_S12_S232 → 2.1 → 2.1.1
75SZe7d5tSZ1SZ:4-126Ribosomal_S24e304 → 304.109 → 304.109.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors