PDB 7D5T
ELECTRON MICROSCOPY0 chains75 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 3Bview chain
1 domainChain 3Cview chain
1 domainChain 3Fview chain
1 domainChain 3Gview chain
1 domainChain 3Hview chain
1 domainChain 5Cview chain
1 domainChain 5Fview chain
1 domainChain 5Gview chain
1 domainChain 5Iview chain
1 domainChain 5Kview chain
1 domainChain A5view chain
1 domainChain AEview chain
1 domainChain B1view chain
3 domainsChain B2view chain
3 domainsChain B3view chain
3 domainsChain B6view chain
1 domainChain B8view chain
1 domainChain BEview chain
2 domainsChain RDview chain
1 domainChain REview chain
6 domainsChain RFview chain
1 domainChain RJview chain
4 domainsChain RKview chain
2 domainsChain RTview chain
2 domainsChain RZview chain
6 domainsChain Scview chain
1 domainChain SCview chain
2 domainsChain Sdview chain
1 domainChain SFview chain
3 domainsChain SGview chain
1 domainChain SHview chain
1 domainChain SIview chain
2 domainsChain SJview chain
1 domainChain SKview chain
1 domainChain SMview chain
1 domainChain SOview chain
2 domainsChain SPview chain
1 domainChain SRview chain
1 domainChain SXview chain
2 domainsChain SYview chain
1 domainChain SZview chain
1 domainAll Domains (75)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 3B | e7d5t3B1 | 3B:79-326 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 2 | 3C | e7d5t3C1 | 3C:86-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 3 | 3D | e7d5t3D1 | 3D:166-300 | Nop | 606 → 606.1 → 606.1.1 |
| 4 | 3D | e7d5t3D2 | 3D:299-340,3D:370-415 | Nop | 102 → 102.1 → 102.1.4 |
| 5 | 3D | e7d5t3D3 | 3D:3-165 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 6 | 3E | e7d5t3E1 | 3E:3-18,3E:38-154 | NOP5NT, Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 7 | 3E | e7d5t3E2 | 3E:285-403 | Nop | 102 → 102.1 → 102.1.4 |
| 8 | 3E | e7d5t3E3 | 3E:155-284 | Nop | 606 → 606.1 → 606.1.1 |
| 9 | 3F | e7d5t3F1 | 3F:113-570 | WD40 | 5 → 5.1 → 5.1.5 |
| 10 | 3G | e7d5t3G1 | 3G:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 11 | 3H | e7d5t3H1 | 3H:5-125 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 12 | 5C | e7d5t5C1 | 5C:58-473 | WD40,BING4CT | 5 → 5.1 → 5.1.5 |
| 13 | 5F | e7d5t5F1 | 5F:2-183 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 14 | 5G | e7d5t5G1 | 5G:84-267 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 15 | 5I | e7d5t5I1 | 5I:65-379 | WD40, Beta-prop_NUP159_NUP214 | 5 → 5.1 → 5.1.4 |
| 16 | 5K | e7d5t5K1 | 5K:40-189 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 17 | A5 | e7d5tA51 | A5:2-330 | 5.1.5.0 | 5 → 5.1 → 5.1.5 |
| 18 | AE | e7d5tAE1 | AE:2-432 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 19 | B1 | e7d5tB11 | B1:2-223,B1:245-343 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 20 | B1 | e7d5tB12 | B1:343-631,B1:675-734 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 21 | B1 | e7d5tB13 | B1:735-856 | Utp12 | 109 → 109.54 → 109.54.1 |
| 22 | B2 | e7d5tB21 | B2:386-687 | WD40, Beta-prop_WDR3_2nd | 5 → 5.1 → 5.1.4 |
| 23 | B2 | e7d5tB22 | B2:5-385 | WD40, Beta-prop_WDR3_1st | 5 → 5.1 → 5.1.4 |
| 24 | B2 | e7d5tB23 | B2:745-917 | Utp12 | 109 → 109.54 → 109.54.1 |
| 25 | B3 | e7d5tB31 | B3:282-651 | WD40 | 5 → 5.1 → 5.1.4 |
| 26 | B3 | e7d5tB32 | B3:652-817 | Utp13 | 109 → 109.54 → 109.54.1 |
| 27 | B3 | e7d5tB33 | B3:3-281 | WD40 | 5 → 5.1 → 5.1.3 |
| 28 | B6 | e7d5tB61 | B6:1-196 | U3_assoc_6, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 29 | B8 | e7d5tB81 | B8:235-591 | WD40 | 5 → 5.1 → 5.1.4 |
| 30 | BE | e7d5tBE1 | BE:350-684 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 31 | BE | e7d5tBE2 | BE:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 32 | RD | e7d5tRD1 | RD:1192-1224,RD:1457-1721 | HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 33 | RE | e7d5tRE1 | RE:100-356 | Nrap | 316 → 316.1 → 316.1.1 |
| 34 | RE | e7d5tRE2 | RE:699-905 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 35 | RE | e7d5tRE3 | RE:906-982,RE:1012-1091 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 36 | RE | e7d5tRE4 | RE:515-698 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 37 | RE | e7d5tRE5 | RE:1092-1237 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 38 | RE | e7d5tRE6 | RE:357-514 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 39 | RF | e7d5tRF1 | RF:3-272 | RRP7,RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 40 | RJ | e7d5tRJ1 | RJ:54-235 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 41 | RJ | e7d5tRJ2 | RJ:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 42 | RJ | e7d5tRJ3 | RJ:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 43 | RJ | e7d5tRJ4 | RJ:236-305,RJ:614-636,RJ:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 44 | RK | e7d5tRK1 | RK:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 45 | RK | e7d5tRK2 | RK:7-182,RK:287-366 | RTC | 328 → 328.6 → 328.6.1 |
| 46 | RT | e7d5tRT1 | RT:178-271 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 47 | RT | e7d5tRT2 | RT:36-45,RT:90-177 | KH_8 | 327 → 327.11 → 327.11.2 |
| 48 | RZ | e7d5tRZ1 | RZ:373-586 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 49 | RZ | e7d5tRZ2 | RZ:908-947,RZ:977-1100 | HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 50 | RZ | e7d5tRZ3 | RZ:587-836 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 51 | RZ | e7d5tRZ4 | RZ:1101-1155 | 2.1.1.0 | 2 → 2.1 → 2.1.1 |
| 52 | RZ | e7d5tRZ5 | RZ:837-907 | HA2_N | 101 → 101.1 → 101.1.2 |
| 53 | RZ | e7d5tRZ6 | RZ:1156-1253 | 2.1.1.0 | 2 → 2.1 → 2.1.1 |
| 54 | Sc | e7d5tSc1 | Sc:3-82 | Ribosomal_S27e | 375 → 375.1 → 375.1.1 |
| 55 | SC | e7d5tSC1 | SC:114-223 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 56 | SC | e7d5tSC2 | SC:3-113,SC:224-244 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 57 | Sd | e7d5tSd1 | Sd:5-67 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 58 | SF | e7d5tSF1 | SF:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 59 | SF | e7d5tSF2 | SF:9-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 60 | SF | e7d5tSF3 | SF:176-255 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 61 | SG | e7d5tSG1 | SG:13-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 62 | SH | e7d5tSH1 | SH:1-62,SH:99-218 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 63 | SI | e7d5tSI1 | SI:6-96,SI:116-119 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 64 | SI | e7d5tSI2 | SI:116-189 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 65 | SJ | e7d5tSJ1 | SJ:22-121,SJ:153-200 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 66 | SK | e7d5tSK1 | SK:9-182 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 67 | SM | e7d5tSM1 | SM:6-142 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 68 | SO | e7d5tSO1 | SO:9-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 69 | SO | e7d5tSO2 | SO:83-142 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 70 | SP | e7d5tSP1 | SP:11-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 71 | SR | e7d5tSR1 | SR:3-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 72 | SX | e7d5tSX1 | SX:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 73 | SX | e7d5tSX2 | SX:4-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 74 | SY | e7d5tSY1 | SY:41-144 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 75 | SZ | e7d5tSZ1 | SZ:4-126 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors