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PDB 7OPD

ELECTRON MICROSCOPY0 chains57 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (57)

#ChainDomain IDRangeFamilyClassification
1ae7opda1a:1-365WD405 → 5.1 → 5.1.4
2Ae7opdA1A:1165-1297RNA_pol_Rpb1_74955 → 4955.1 → 4955.1.1
3Ae7opdA2A:389-449RNA_pol_Rpb1_2275 → 275.1 → 275.1.1
4Ae7opdA3A:11-155,A:182-350RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
5Ae7opdA4A:686-894RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
6Ae7opdA5A:1083-1135,A:1361-1481RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
7Ae7opdA6A:534-685RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
8Ae7opdA7A:1136-1164,A:1298-1360RNA_pol_Rpb1_54956 → 4956.1 → 4956.1.1
9Ae7opdA8A:351-388,A:450-533RNA_pol_Rpb1_21 → 1.1 → 1.1.2
10Ae7opdA9A:895-1082RNA_pol_Rpb1_64957 → 4957.1 → 4957.1.1
11be7opdb1b:490-753SNF2-rel_dom2004 → 2004.1 → 2004.1.1
12be7opdb2b:754-1011,b:1383-1399SNF2-rel_dom,Helicase_C2004 → 2004.1 → 2004.1.1
13Be7opdB1B:15-199,B:391-528RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
14Be7opdB2B:768-805,B:930-1055RNA_pol_Rpb2_61 → 1.1 → 1.1.2
15Be7opdB3B:1054-1174RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
16Be7opdB4B:619-767RNA_pol_Rpb2_6,RNA_pol_Rpb2_54042 → 4042.1 → 4042.1.1
17Be7opdB5B:200-391RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
18Be7opdB6B:529-618RNA_pol_Rpb2_44961 → 4961.1 → 4961.1.1
19Be7opdB7B:806-929RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
20ce7opdc1c:3-143UVSSA_N109 → 109.4 → 109.4.1
21Ce7opdC1C:2-42,C:179-270RNA_pol_L305 → 305.1 → 305.1.1
22Ce7opdC2C:43-178RNA_pol_A_bac240 → 240.2 → 240.2.1
23de7opdd1d:1-385MMS1_N5 → 5.1 → 5.1.4
24de7opdd2d:685-1044CPSF_A5 → 5.1 → 5.1.4
25de7opdd3d:1045-1140CPSF_A101 → 101.1 → 101.1.1
26de7opdd4d:386-684Beta-prop_RSE1_2nd5 → 5.1 → 5.1.4
27De7opdD1D:14-141RNA_pol_Rpb4102 → 102.1 → 102.1.1
28ee7opde1e:49-402Cullin109 → 109.4 → 109.4.1
29ee7opde2e:675-759Cullin_Nedd8101 → 101.1 → 101.1.2
30ee7opde3e:493-591Cullin_AB4001 → 4001.1 → 4001.1.1
31ee7opde4e:403-492Cullin109 → 109.4 → 109.4.1
32ee7opde5e:592-674PF26557101 → 101.1 → 101.1.2
33Ee7opdE1E:2-138RNA_pol_Rpb5_N2008 → 2008.3 → 2008.3.1
34Ee7opdE2E:139-210RNA_pol_Rpb5_C840 → 840.1 → 840.1.1
35fe7opdf1f:19-106zf-rbx1376 → 376.1 → 376.1.1
36Fe7opdF1F:46-127RNA_pol_Rpb6152 → 152.1 → 152.1.1
37Ge7opdG1G:79-171S12 → 2.1 → 2.1.1
38Ge7opdG2G:1-78SHS2_Rpb7-N872 → 872.1 → 872.1.1
39He7opdH1H:2-149RNA_pol_Rpb82 → 2.1 → 2.1.1
40Ie7opdI1I:62-125TFIIS_C375 → 375.1 → 375.1.1
41Ie7opdI2I:9-61RNA_POL_M_15KD375 → 375.1 → 375.1.1
42Je7opdJ1J:1-67RNA_pol_N101 → 101.4 → 101.4.1
43Ke7opdK1K:1-115RNA_pol_L_2305 → 305.1 → 305.1.1
44Le7opdL1L:13-58DNA_RNApol_7kD375 → 375.1 → 375.1.1
45Me7opdM1M:945-1042HHH_7102 → 102.1 → 102.1.1
46Me7opdM2M:515-756Tex_central_region4342 → 4342.1 → 4342.1.1
47Me7opdM3M:757-944YqgF2484 → 2484.1 → 2484.1.1
48Me7opdM4M:405-475632.13.1.0632 → 632.13 → 632.13.1
49Me7opdM5M:284-332,M:355-404HTH_44101 → 101.26 → 101.26.1
50Me7opdM6M:1043-1144HHH_9102 → 102.1 → 102.1.1
51Me7opdM7M:1145-1175,M:1226-1287Spt6_S12 → 2.1 → 2.1.1
52Se7opdS1S:1-246,S:391-393TPR_8, TPR_16, TPR_19109 → 109.4 → 109.4.1
53Se7opdS2S:306-390,S:394-409TPR_2,TPR_8109 → 109.4 → 109.4.1
54Se7opdS3S:502-763TPR_8, TPR_16, TPR_19109 → 109.4 → 109.4.1
55Ye7opdY1Y:5-304WD40, ANAPC4_WD40, Beta-prop_NOL10_N5 → 5.1 → 5.1.5
56Ze7opdZ1Z:1-111CDC73_N101 → 101.46 → 101.46.1
57Ze7opdZ2Z:358-523CDC73_C2004 → 2004.1 → 2004.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors