PDB 7YCX
ELECTRON MICROSCOPY0 chains46 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 1view chain
9 domainsChain 2view chain
7 domainsChain 3view chain
2 domainsChain 4view chain
2 domainsChain 5view chain
1 domainChain 6view chain
1 domainChain 7view chain
2 domainsChain 8view chain
1 domainChain 9view chain
1 domainChain aview chain
1 domainChain iview chain
1 domainChain jview chain
7 domainsChain kview chain
2 domainsChain Kview chain
3 domainsChain lview chain
1 domainChain Pview chain
1 domainChain Qview chain
1 domainAll Domains (46)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e7ycx11 | 1:389-449 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 2 | 1 | e7ycx12 | 1:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 3 | 1 | e7ycx13 | 1:11-155,1:181-350 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 4 | 1 | e7ycx14 | 1:1136-1164,1:1298-1360 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 5 | 1 | e7ycx15 | 1:1083-1135,1:1361-1487,1:1700-1703,1:1758-1771,1:1793-1800,1:1857-1864 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 6 | 1 | e7ycx16 | 1:351-388,1:450-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 7 | 1 | e7ycx17 | 1:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 8 | 1 | e7ycx18 | 1:1165-1297 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 9 | 1 | e7ycx19 | 1:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 10 | 2 | e7ycx21 | 2:16-67,2:87-200,2:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | 2 | e7ycx22 | 2:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 12 | 2 | e7ycx23 | 2:769-805,2:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | 2 | e7ycx24 | 2:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 14 | 2 | e7ycx25 | 2:619-768 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 15 | 2 | e7ycx26 | 2:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 16 | 2 | e7ycx27 | 2:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 17 | 3 | e7ycx31 | 3:2-42,3:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | 3 | e7ycx32 | 3:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | 4 | e7ycx41 | 4:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 20 | 4 | e7ycx42 | 4:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 21 | 5 | e7ycx51 | 5:47-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 22 | 6 | e7ycx61 | 6:2-149 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 23 | 7 | e7ycx71 | 7:9-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 24 | 7 | e7ycx72 | 7:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 25 | 8 | e7ycx81 | 8:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 26 | 9 | e7ycx91 | 9:1-117 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 27 | a | e7ycxa1 | a:13-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 28 | i | e7ycxi1 | i:2-117 | Spt4 | 375 → 375.1 → 375.1.1 |
| 29 | I | e7ycxI1 | I:1-266,I:424-556 | Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 30 | I | e7ycxI2 | I:267-423 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 31 | I | e7ycxI3 | I:582-658 | IntS9_C | 331 → 331.23 → 331.23.1 |
| 32 | j | e7ycxj1 | j:270-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 33 | j | e7ycxj2 | j:176-269 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 34 | j | e7ycxj3 | j:471-526 | KOW | 4 → 4.1 → 4.1.1 |
| 35 | j | e7ycxj4 | j:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 36 | j | e7ycxj5 | j:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 37 | j | e7ycxj6 | j:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 38 | j | e7ycxj7 | j:527-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
| 39 | k | e7ycxk1 | k:78-171 | S1 | 2 → 2.1 → 2.1.1 |
| 40 | k | e7ycxk2 | k:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 41 | K | e7ycxK1 | K:3-225 | Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 42 | K | e7ycxK2 | K:391-597 | 331.23.1.1 | 331 → 331.23 → 331.23.1 |
| 43 | K | e7ycxK3 | K:218-390 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 44 | l | e7ycxl1 | l:14-141 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 45 | P | e7ycxP1 | P:9-589 | HEAT, HEAT_2, PPP2R1A-like_HEAT, VPS15-like_hel | 109 → 109.4 → 109.4.1 |
| 46 | Q | e7ycxQ1 | Q:2-294 | Metallophos | 246 → 246.2 → 246.2.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors